{"id":"W2163348081","doi":"10.1186/1471-2148-11-258","title":"Molecular evolution under increasing transposable element burden in Drosophila: A speed limit on the evolutionary arms race","year":2011,"lang":"en","type":"article","venue":"BMC Evolutionary Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Science Foundation","keywords":"Biology; Piwi-interacting RNA; Transposable element; Negative selection; Genetics; Genome; Natural selection; Evolutionary biology; Gene; Abundance (ecology); Background selection; Genome evolution; Codon usage bias; Selection (genetic algorithm); Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003785327,0.0002288886,0.0002094352,0.00004648155,0.0003233826,0.00001220352,0.0003596795,0.0002097879,0.0009432927],"category_scores_gemma":[0.00009657929,0.0000978735,0.0001465582,0.0005155858,0.0001897005,0.00008822142,0.00008616682,0.0002120634,0.000155058],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002240038,"about_ca_system_score_gemma":0.00006691133,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001490649,"about_ca_topic_score_gemma":0.0006546187,"domain_scores_codex":[0.9979432,0.0005213831,0.0003834227,0.0004930613,0.0001887579,0.0004702242],"domain_scores_gemma":[0.9991745,0.0003931906,0.000111859,0.0001464959,0.00008498255,0.00008893454],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000717766,0.0009815113,0.3112861,0.00001209667,0.0000815673,0.00001566999,0.0004724716,0.003156767,0.4354378,0.2466547,0.0003722754,0.0008113122],"study_design_scores_gemma":[0.0003531872,0.0004648908,0.9186209,0.0000310758,0.00002160731,0.00003619161,0.0004539211,0.002994401,0.0004650748,0.07495341,0.001341717,0.000263608],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908566,0.0008032033,0.000158414,0.00515645,0.0001816515,0.0005186187,0.00009166379,0.00006922497,0.002164134],"genre_scores_gemma":[0.9981714,0.0000371744,0.0008264386,0.0003266543,0.0002793628,0.00006349277,0.0002021174,0.000002671622,0.00009062942],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6073348,"threshold_uncertainty_score":0.99997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03794899607964602,"score_gpt":0.224919385719679,"score_spread":0.1869703896400329,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}