{"id":"W2163662235","doi":"10.1093/infdis/jit443","title":"Associations Between Human Leukocyte Antigen Class I Variants and the Mycobacterium tuberculosis Subtypes Causing Disease","year":2013,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Cancer Institute; Fogarty International Center; National Institutes of Health; Wellcome Trust","keywords":"Tuberculosis; Human leukocyte antigen; Mycobacterium tuberculosis; Biology; Genotype; Genotyping; Allele; Immunology; Disease; Genetics; Virology; Antigen; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001055714,0.0001619767,0.000532141,0.0001371821,0.0005479351,0.00008469894,0.000123768,0.00006150986,0.0001274962],"category_scores_gemma":[0.002219427,0.00008006443,0.0002311521,0.0001883176,0.000394804,0.0002944247,0.0000866525,0.0003943358,0.00002085669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001311828,"about_ca_system_score_gemma":0.0001777476,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009372529,"about_ca_topic_score_gemma":0.00003559787,"domain_scores_codex":[0.9977892,0.0008834765,0.000529615,0.0001179275,0.0003322158,0.0003475765],"domain_scores_gemma":[0.9970754,0.001393795,0.0003799647,0.000271141,0.0003968498,0.0004828229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002241586,0.0001193669,0.9919824,0.00003049583,0.0008126483,0.00001829274,0.0001899092,0.00002425,0.0008780963,0.0002110544,0.004988701,0.0005206526],"study_design_scores_gemma":[0.00189186,0.0001850484,0.9936121,0.00007007858,0.0010842,0.0001038366,0.00006819372,0.00009426744,0.00004234694,0.002526497,0.0002342556,0.00008735749],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843968,0.002208377,0.00004834837,0.01239731,0.0001050302,0.0003835619,0.00004430792,0.00002522188,0.0003910791],"genre_scores_gemma":[0.9958151,0.002209631,0.000006736117,0.001115189,0.00075028,0.000009173209,0.00002323345,0.0000195255,0.0000511556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01141832,"threshold_uncertainty_score":0.4214329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02012824092948983,"score_gpt":0.3031501760838954,"score_spread":0.2830219351544055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}