{"id":"W2163774896","doi":"10.1371/journal.pone.0098115","title":"Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Institute for Biological Sciences; University of Lethbridge","funders":"Genome Alberta","keywords":"Biology; Feces; Bacteroidetes; Escherichia coli; Microbiome; Firmicutes; Microbiology; Pyrosequencing; Operational taxonomic unit; Dysbiosis; Bacteria; Zoology; 16S ribosomal RNA; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003534282,0.0002026406,0.0003683619,0.000457897,0.0003435198,0.0006617271,0.0001200379,0.0002446577,0.0006107661],"category_scores_gemma":[0.0004534264,0.000151522,0.0002438252,0.000444496,0.0002871786,0.0001917168,0.0003581776,0.0001925671,0.0001462216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001663616,"about_ca_system_score_gemma":0.0001465548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003032727,"about_ca_topic_score_gemma":0.00737867,"domain_scores_codex":[0.9996518,0.00005279683,0.00003168162,0.000100896,0.00009726432,0.00006557951],"domain_scores_gemma":[0.99961,0.00007878087,0.0001247558,0.00003214854,0.00006735607,0.0000870408],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001140617,0.0001240387,0.6159525,0.0001849828,0.0001620027,0.0003207235,0.001507841,0.0003414839,0.3652921,0.00006658445,0.0001124464,0.01479473],"study_design_scores_gemma":[0.000003716901,0.0003456884,0.9900434,0.00001079506,0.00003682484,0.0002868894,0.0008349197,0.0004553311,0.007501693,0.00003026917,0.0004432084,0.000007334891],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999521,0.00004969916,0.0002284261,0.000002888383,0.000001243465,0.00000219243,0.0001147302,0.000002060759,0.00007775232],"genre_scores_gemma":[0.9977672,0.000104691,0.0009437237,0.00002339905,0.000003490083,0.000008704076,0.0008615919,0.000003310251,0.0002838852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003032727,"threshold_uncertainty_score":0.006030142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02067082102987783,"score_gpt":0.219416370070892,"score_spread":0.1987455490410141,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}