{"id":"W2163779088","doi":"10.1139/w11-022","title":"Validation and standardization of IS900 and F57 real-time quantitative PCR assays for the specific detection and quantification of<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Regione Piemonte","keywords":"Paratuberculosis; Biology; In silico; Real-time polymerase chain reaction; Mycobacterium; Computational biology; Microbiology; Virology; Genetics; Bacteria; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007423798,0.00009773318,0.0003046823,0.0002459772,0.00009204766,0.00001715883,0.00005308479,0.000110622,0.00005106636],"category_scores_gemma":[0.0002742933,0.00007304797,0.00004959866,0.0001195583,0.0003114908,0.0001114936,0.000008905824,0.0001076716,8.422448e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005223972,"about_ca_system_score_gemma":0.0002556774,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009690714,"about_ca_topic_score_gemma":0.001165951,"domain_scores_codex":[0.9991152,0.0001364658,0.0003941215,0.0001374424,0.00004862186,0.0001680913],"domain_scores_gemma":[0.9984439,0.0003194436,0.0003404772,0.0001165429,0.0005880024,0.0001916584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005183353,0.00001676414,0.01385615,0.00009856977,0.00009989719,0.000002505265,0.0007805226,0.000001485191,0.982115,0.0002401493,0.0007034633,0.001567181],"study_design_scores_gemma":[0.001730561,0.00228891,0.1307622,0.0001750664,0.0003232055,0.0005706787,0.0006238977,0.00005267631,0.8580651,0.0002477832,0.005023712,0.0001362345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924805,0.001936997,0.004366434,0.0003468747,0.0001449211,0.0003689568,0.0002553112,0.00000226856,0.00009780128],"genre_scores_gemma":[0.9956222,0.002822582,0.001406803,0.0000275753,0.0000488254,0.00000565587,0.0000392643,0.00001090067,0.00001615144],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1240499,"threshold_uncertainty_score":0.2978809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03735232309694629,"score_gpt":0.2668123367677614,"score_spread":0.2294600136708151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}