{"id":"W2163920154","doi":"10.1101/gr.100271.109","title":"High-throughput sequence analysis of <i>Ciona intestinalis</i> SL <i>trans</i>-spliced mRNAs: Alternative expression modes and gene function correlates","year":2010,"lang":"en","type":"article","venue":"Genome Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; McGill Genome Centre; Montreal Neurological Institute and Hospital","funders":"Canadian Institutes of Health Research","keywords":"Ciona intestinalis; Biology; Trans-splicing; Ciona; Gene; Genetics; Alternative splicing; RNA splicing; Nonsense-mediated decay; Exon; Genome; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002430717,0.0002983368,0.0003032023,0.0006028142,0.0002957819,0.0004675834,0.0002300318,0.0002800462,0.000420401],"category_scores_gemma":[0.0005207143,0.0001187409,0.0003367452,0.000507224,0.0001549462,0.0001336987,0.0002047695,0.0003630709,0.0004101363],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001674468,"about_ca_system_score_gemma":0.0002001588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001446915,"about_ca_topic_score_gemma":0.002524586,"domain_scores_codex":[0.9998183,0.0000144966,0.00001273314,0.00005821307,0.0000728375,0.00002341864],"domain_scores_gemma":[0.9997124,0.00008780217,0.00004844575,0.00002751142,0.0000870708,0.0000366302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003922994,0.000008475092,0.00117815,0.00003982994,0.000007541383,0.00005068145,0.00004224369,0.00007673256,0.9966527,0.00002040415,0.00003543477,0.001848772],"study_design_scores_gemma":[0.00001583014,0.0004147986,0.263877,0.00003843965,0.0001183915,0.001325273,0.0003057737,0.008344688,0.719482,0.0002063343,0.005827822,0.00004365664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870273,0.0004958417,0.007850884,0.00003870477,0.00001250316,0.00004087306,0.003400193,0.0001225866,0.001011232],"genre_scores_gemma":[0.9522333,0.0006566694,0.03331515,0.0001528404,0.00002036119,0.00009983048,0.01180308,0.0001228948,0.001595948],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001446915,"threshold_uncertainty_score":0.002876937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03784375827216761,"score_gpt":0.3368554625467626,"score_spread":0.299011704274595,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}