{"id":"W2163947570","doi":"10.1128/jcm.42.6.2573-2580.2004","title":"Genomic Characterization of an Endemic<i>Mycobacterium tuberculosis</i>Strain: Evolutionary and Epidemiologic Implications","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Genotyping; Biology; Mycobacterium tuberculosis; Restriction fragment length polymorphism; Genetics; Genotype; Tuberculosis; Molecular epidemiology; Population; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002422516,0.0003089024,0.0002985291,0.0009562979,0.0005994762,0.0004343391,0.000360761,0.0003989325,0.0007999787],"category_scores_gemma":[0.0008347362,0.00009833599,0.0001517434,0.001160082,0.0004514004,0.00010609,0.0001902028,0.0003234211,0.0001867502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001505127,"about_ca_system_score_gemma":0.001474445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1999336,"about_ca_topic_score_gemma":0.3284094,"domain_scores_codex":[0.9997528,0.00003081566,0.00001288618,0.00007563071,0.00005356095,0.00007431833],"domain_scores_gemma":[0.9994736,0.00009397721,0.0001544776,0.00004354782,0.0001442864,0.00009008537],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002390669,0.00007340868,0.8526024,0.00009837125,0.00004739476,0.0009468163,0.001201338,0.0006831816,0.1305084,0.0002226721,0.000166414,0.01321056],"study_design_scores_gemma":[0.000004093118,0.00008609552,0.9951451,0.000009138327,0.00001431735,0.0009547235,0.0005637915,0.0004760833,0.001835825,0.00003232796,0.0008724915,0.000006065261],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982681,0.0001738453,0.0004053558,0.00004895491,0.00000153709,0.00001548347,0.0005728182,0.000003812912,0.0005100356],"genre_scores_gemma":[0.9979346,0.0001229409,0.0007649119,0.00004821946,0.000004871916,0.000006905692,0.0009202188,0.000003883181,0.0001935288],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1999336,"threshold_uncertainty_score":0.3975397,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06488087181456992,"score_gpt":0.3924908507801846,"score_spread":0.3276099789656147,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}