{"id":"W2164065207","doi":"10.1101/gr.341802","title":"Evidence That Plant-Like Genes in <i>Chlamydia</i> Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"Pacific Centre for Reproductive Medicine; BC Cancer Agency; BC Centre for Disease Control; Simon Fraser University; University of British Columbia","funders":"","keywords":"Biology; Genome; Chlamydiaceae; Genetics; Gene; Horizontal gene transfer; Obligate; Chlamydia; Chlamydia trachomatis; Lineage (genetic); Chlamydiales; Chloroplast; Virology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002007768,0.0001277359,0.0001130625,0.0003705081,0.0004508473,0.0004382847,0.0001819888,0.0004471694,0.001522356],"category_scores_gemma":[0.000482126,0.0001254999,0.0001930079,0.000512686,0.00055753,0.0003047231,0.0002816909,0.0005477969,0.0004149865],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004317992,"about_ca_system_score_gemma":0.0004653425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002559204,"about_ca_topic_score_gemma":0.003691316,"domain_scores_codex":[0.9998887,0.00001031914,0.000005558764,0.00003743857,0.00002661985,0.00003141039],"domain_scores_gemma":[0.9994067,0.0001661265,0.0001724608,0.0000652737,0.00009543008,0.00009395998],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002522128,0.00002435566,0.03629687,0.0002347419,0.00003962826,0.000237419,0.000236937,0.00008688001,0.9531964,0.0008275982,0.0002749556,0.00829185],"study_design_scores_gemma":[0.0000478195,0.0004494569,0.8040801,0.0001361004,0.0002435623,0.005374062,0.0008048905,0.0006027412,0.1660973,0.0022296,0.01988957,0.00004482076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882613,0.002613188,0.00292668,0.0003290088,0.00003682497,0.00001017893,0.0005890569,0.00006588483,0.005167901],"genre_scores_gemma":[0.9925367,0.001194377,0.003667412,0.0003605037,0.0000168226,0.000006368037,0.001185428,0.00001270048,0.001019677],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002559204,"threshold_uncertainty_score":0.0050928,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.36752855564966,"score_gpt":0.379995650780561,"score_spread":0.01246709513090105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}