{"id":"W2164172900","doi":"10.1186/1757-4749-1-15","title":"Mycobacterium avium subspecies paratuberculosis, Crohn's disease and the Doomsday scenario","year":2009,"lang":"en","type":"article","venue":"Gut Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Disease; Subspecies; Mycobacterium; Crohn's disease; Outbreak; Incidence (geometry); Biology; Immunology; Medicine; Microbiology; Zoology; Virology; Bacteria; Pathology; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000404471,0.0002665629,0.0004157689,0.0001035628,0.0002574877,0.0001688028,0.0001552971,0.00009399685,0.0004050251],"category_scores_gemma":[0.0005136583,0.0001640892,0.0002154321,0.0002524571,0.0003407246,0.0001364244,0.00008283246,0.0002911502,0.0001604557],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005516899,"about_ca_system_score_gemma":0.000149843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002981852,"about_ca_topic_score_gemma":0.00001327652,"domain_scores_codex":[0.9980344,0.0001609499,0.0002902688,0.0004317796,0.0004675461,0.0006150209],"domain_scores_gemma":[0.9981608,0.0001982572,0.00006435451,0.000678649,0.0001503627,0.0007475261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01976033,0.00219403,0.5931773,0.0007852029,0.0007083366,0.009600971,0.004078557,0.000006889463,0.1848413,0.01843544,0.1380681,0.02834357],"study_design_scores_gemma":[0.002529005,0.0001688478,0.97433,0.00008424868,0.0002597022,0.00008111761,0.00008027464,0.00005751969,0.0004897604,0.0004962923,0.02122008,0.000203122],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9706039,0.003621414,0.00002263401,0.020382,0.0001929479,0.0008343798,0.0001457192,0.0001034532,0.004093519],"genre_scores_gemma":[0.9906666,0.003226015,0.0001685247,0.003731225,0.0006149304,0.00007221587,0.00009815827,0.0000219045,0.001400423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3811527,"threshold_uncertainty_score":0.6691365,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01343445128734189,"score_gpt":0.2619276513208252,"score_spread":0.2484932000334833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}