{"id":"W2164253009","doi":"10.1186/gb-2007-8-2-402","title":"Systematic overestimation of gene gain through false diagnosis of gene absence.","year":2007,"lang":"en","type":"letter","venue":"Genome Biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"Genome Atlantic; Canadian Institutes of Health Research; Killam Trusts; Dalhousie University; Genome Canada","keywords":"Gene; Information gain; Genetics; Biology; Computational biology; Computer science; Data mining","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.005979032,0.0004620135,0.0008015427,0.0007085047,0.0006172701,0.001474078,0.001596256,0.008700278,0.00278608],"category_scores_gemma":[0.03822508,0.0003599967,0.000400221,0.0005861483,0.003083815,0.001377824,0.0007220594,0.008137708,0.003783183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001132477,"about_ca_system_score_gemma":0.0005305679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007561287,"about_ca_topic_score_gemma":0.001113919,"domain_scores_codex":[0.9960996,0.001319377,0.0003657372,0.0006409965,0.001291897,0.0002823608],"domain_scores_gemma":[0.9615534,0.02997283,0.002090608,0.001755454,0.003639435,0.0009883333],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001965919,0.00009770799,0.02615346,0.0004997304,0.0001806256,0.03475726,0.000434942,0.0007149219,0.01185255,0.0185244,0.7515878,0.1532308],"study_design_scores_gemma":[0.0008316612,0.0006241446,0.03601408,0.0007112595,0.0004104612,0.2404323,0.001003528,0.008587303,0.04948188,0.1173462,0.5442109,0.0003462708],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.03561626,0.01420613,0.01998741,0.8691761,0.03882043,0.00007787321,0.001101368,0.0008021888,0.0202122],"genre_scores_gemma":[0.3210069,0.009051194,0.01154868,0.5925125,0.05015058,0.0001219474,0.0005354402,0.0003601148,0.0147127],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.9940209,"threshold_uncertainty_score":0.0316205,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02114023147481443,"score_gpt":0.261657123760832,"score_spread":0.2405168922860176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}