{"id":"W2164298117","doi":"10.1093/nar/gkq1039","title":"Pathway Commons, a web resource for biological pathway data","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1156,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute; National Institutes of Health; Memorial Sloan-Kettering Cancer Center","keywords":"Biology; Commons; World Wide Web; Download; Software; Interface (matter); Resource (disambiguation); Database; Computer science; Computational biology; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002829942,0.001981287,0.002410307,0.01095725,0.001562035,0.004464146,0.003957953,0.001769063,0.06485601],"category_scores_gemma":[0.008773189,0.001577288,0.001611551,0.0149176,0.0004934043,0.003622835,0.004279425,0.003351334,0.05087313],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001391893,"about_ca_system_score_gemma":0.007049576,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005979519,"about_ca_topic_score_gemma":0.008139112,"domain_scores_codex":[0.9980732,0.0003074193,0.0003325362,0.0003977742,0.0007257345,0.0001632122],"domain_scores_gemma":[0.9957376,0.001315961,0.0004980282,0.0008755276,0.0007677636,0.000805081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009886567,0.0001502938,0.002572058,0.007542832,0.0003515074,0.0007045247,0.0002292386,0.002795267,0.0116523,0.0149288,0.9097013,0.0483832],"study_design_scores_gemma":[0.0003306697,0.00004493089,0.003685769,0.0006393085,0.0001610832,0.0006241735,0.0001227798,0.003645881,0.005271533,0.01531879,0.9700023,0.0001527527],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.001132571,0.001591247,0.02070477,0.0004058832,0.0002145868,0.0003466138,0.9333143,0.03311751,0.009172563],"genre_scores_gemma":[0.003606233,0.001589471,0.03050009,0.0001909369,0.00004756025,0.0004985419,0.9572755,0.003612678,0.002679118],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.06485601,"threshold_uncertainty_score":0.216965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.075492571914846,"score_gpt":0.3378566202817578,"score_spread":0.2623640483669119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}