{"id":"W2164314044","doi":"10.1128/aac.00247-09","title":"Molecular Characteristics of Extended-Spectrum-β-Lactamase-Producing <i>Escherichia coli</i> Isolates Causing Bacteremia in the Calgary Health Region from 2000 to 2007: Emergence of Clone ST131 as a Cause of Community-Acquired Infections","year":2009,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"Calgary Laboratory Services","keywords":"Microbiology; Multilocus sequence typing; Escherichia coli; Ciprofloxacin; Biology; clone (Java method); Gentamicin; Pulsed-field gel electrophoresis; Bacteremia; Plasmid; Molecular epidemiology; Genotype; Antibiotics; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002475319,0.000200711,0.0003940123,0.00005973668,0.00009752001,0.00001675565,0.0002050422,0.000117758,0.00001991935],"category_scores_gemma":[0.00003118207,0.0001805794,0.00007855274,0.0002172075,0.0001251016,0.00001138539,0.00004385407,0.0001294765,3.834822e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001780064,"about_ca_system_score_gemma":0.0001090683,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001856871,"about_ca_topic_score_gemma":0.0001050951,"domain_scores_codex":[0.99866,0.0002171335,0.0005475868,0.0002431112,0.00009433476,0.0002377823],"domain_scores_gemma":[0.9989647,0.00001975008,0.0003720332,0.0005176197,0.00006923282,0.0000566208],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003717681,0.0005120896,0.01938703,0.00006380847,0.00007291504,0.000005357854,0.001960288,0.000009446037,0.9748329,0.00001633187,0.001501722,0.001266323],"study_design_scores_gemma":[0.0008027426,0.0008208242,0.5037627,0.0002450205,0.00002952423,0.00001848121,0.0002754412,0.00001250741,0.4929934,0.00005652717,0.0007532587,0.0002296438],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972522,0.0001227084,0.0009706091,0.001133058,0.00008000097,0.0003509421,0.00004409483,0.000005529389,0.000040828],"genre_scores_gemma":[0.9933687,0.001720245,0.0004529841,0.004268624,0.00004786433,0.000001506719,0.0001009048,0.00002138454,0.00001772551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4843757,"threshold_uncertainty_score":0.7363815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01313199017238389,"score_gpt":0.2700192266618602,"score_spread":0.2568872364894763,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}