{"id":"W2164341354","doi":"10.1177/1947601912457026","title":"Differential Chromatin Structure Encompassing Replication Origins in Transformed and Normal Cells","year":2012,"lang":"en","type":"article","venue":"Genes & Cancer","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Canadian Prostate Cancer Research Initiative; Faculty of Medicine, McGill University; McGill University","keywords":"Chromatin; Biology; Histone; Molecular biology; Chromatin immunoprecipitation; ChIA-PET; ChIP-on-chip; Cell biology; DNA replication; Histone H1; Nucleosome; DNA; Gene; Genetics; Gene expression; Promoter","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000435671,0.0001013907,0.00009116605,0.00002474845,0.00003689148,0.00001277065,0.00006604448,0.00009810596,0.00009385353],"category_scores_gemma":[0.000002570752,0.00009358758,0.00002616635,0.00004346636,0.00002336262,0.000007575389,0.00002642343,0.00004623762,0.000001130136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003464026,"about_ca_system_score_gemma":0.00003707481,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008180923,"about_ca_topic_score_gemma":0.0002893813,"domain_scores_codex":[0.9993575,0.00002243871,0.0001198797,0.0002101246,0.0000706416,0.0002194319],"domain_scores_gemma":[0.9996798,0.000002313607,0.00003963263,0.0002047303,0.00001438927,0.0000591292],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002033368,0.00001401831,0.004525903,0.0000206902,0.00001023662,1.646337e-7,0.0001416155,0.00001812668,0.9561588,0.00003529397,0.00004918662,0.03900569],"study_design_scores_gemma":[0.0003056922,0.00002652018,0.02007384,0.000009256955,0.0000124445,0.000004875687,0.00002609485,0.0001126737,0.965652,0.00001748635,0.01364127,0.0001177829],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966404,0.001725471,0.001052423,0.00003927734,0.0002961147,0.0001393098,0.0000273035,0.000009711331,0.00006996856],"genre_scores_gemma":[0.9983583,0.0003297953,0.0007142944,0.00006544564,0.0003667485,0.00003500787,0.0000476868,0.00001411384,0.00006860305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0388879,"threshold_uncertainty_score":0.3816391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008652576464880279,"score_gpt":0.2589558188661101,"score_spread":0.2503032424012298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}