{"id":"W2164419047","doi":"10.1128/jb.185.2.674-678.2003","title":"Experimental Verification of a Sequence-Based Prediction: F <sub>1</sub> F <sub>0</sub> -Type ATPase of <i>Vibrio cholerae</i> Transports Protons, Not Na <sup>+</sup> Ions","year":2003,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Cancer Institute; Natural Sciences and Engineering Research Council of Canada; American Lebanese Syrian Associated Charities","keywords":"Vibrio cholerae; Biology; ATPase; Vibrio; Escherichia coli; Protein subunit; Bacteria; Vesicle; Mutant; Biochemistry; Enzyme; Archaea; Membrane; Biophysics; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006336709,0.0003238706,0.0006773353,0.0002063712,0.0001182159,0.00001777673,0.0002951095,0.0003326672,0.00002528447],"category_scores_gemma":[0.0002818186,0.0003005042,0.000332722,0.0002434263,0.0005250992,0.00003842649,0.00005300147,0.0003240971,0.000003670121],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009954622,"about_ca_system_score_gemma":0.0007631002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006001892,"about_ca_topic_score_gemma":0.000003875502,"domain_scores_codex":[0.9972287,0.000430659,0.001158474,0.0004084642,0.0003400836,0.0004336018],"domain_scores_gemma":[0.9977728,0.00004900872,0.000841566,0.0004715528,0.0006593688,0.0002056657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00161317,0.0004178462,0.004206039,0.00008989133,0.0002519009,0.00002801675,0.0002057118,0.0003846807,0.9919002,0.00002024541,0.000217958,0.0006643278],"study_design_scores_gemma":[0.002005381,0.002933883,0.0153119,0.0001158493,0.00006755187,0.0002235714,0.0001418931,0.00005367426,0.9770496,0.000008695684,0.001875249,0.0002127265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976541,0.000560413,0.0004360357,0.0001882219,0.0002867038,0.0006358947,0.0001815782,0.00001059362,0.00004646031],"genre_scores_gemma":[0.998141,0.0006309673,0.0006099343,0.0001259317,0.0002112221,0.00007165477,0.0001626623,0.0000399957,0.000006622488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01485058,"threshold_uncertainty_score":0.9999447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02241359560992836,"score_gpt":0.2683744391460302,"score_spread":0.2459608435361018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}