{"id":"W2164823106","doi":"10.1186/gb-2007-8-3-r41","title":"A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome","year":2007,"lang":"en","type":"article","venue":"Genome biology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":108,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of New Brunswick","funders":"National Human Genome Research Institute; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Science Foundation","keywords":"Biology; Genome; Sequence (biology); Genetics; Shotgun sequencing; Locus (genetics); Computational biology; Sequence assembly; Reference genome; Evolutionary biology; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000482389,0.0005296567,0.000708657,0.002498056,0.0008860906,0.0005199108,0.001091642,0.0006475106,0.004018266],"category_scores_gemma":[0.0008981961,0.0002688102,0.0003359246,0.00229985,0.0002938686,0.0002694912,0.0004167948,0.000951925,0.001456235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006867363,"about_ca_system_score_gemma":0.001141208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004070292,"about_ca_topic_score_gemma":0.005649401,"domain_scores_codex":[0.9997736,0.00002697583,0.00002130879,0.00007614787,0.00006140675,0.00004065812],"domain_scores_gemma":[0.999582,0.00006206,0.00004874598,0.0001015708,0.0001327114,0.00007285232],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005473273,0.00006171194,0.0009395031,0.0003901278,0.00002280859,0.0006470917,0.0002564816,0.0009046175,0.9707061,0.00180246,0.001209966,0.0225118],"study_design_scores_gemma":[0.000351924,0.001095225,0.1616622,0.0003484943,0.0003372119,0.005815416,0.0007218284,0.01116242,0.4784517,0.00477887,0.3350187,0.0002560743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7720234,0.003693108,0.1419706,0.0003636429,0.0003098545,0.0008175421,0.06330179,0.001920722,0.01559932],"genre_scores_gemma":[0.5042965,0.002903998,0.2418272,0.0001483859,0.00006816418,0.0007616675,0.239099,0.0006754983,0.01021957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004070292,"threshold_uncertainty_score":0.01344246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02371605678943017,"score_gpt":0.251038312682577,"score_spread":0.2273222558931469,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}