{"id":"W2165145683","doi":"10.1186/1471-2105-14-69","title":"BOND: Basic OligoNucleotide Design","year":2013,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Compute Canada","keywords":"Oligonucleotide; DNA microarray; Computer science; Software; Computational biology; DNA; Gene; Biology; Genetics; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001460168,0.001660231,0.001055344,0.001068103,0.0006450822,0.001535118,0.00251133,0.001040546,0.04944803],"category_scores_gemma":[0.003984239,0.001186581,0.001465347,0.001136593,0.0007261889,0.00138032,0.001188009,0.001956834,0.02680228],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005925603,"about_ca_system_score_gemma":0.001175927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006424868,"about_ca_topic_score_gemma":0.0007457464,"domain_scores_codex":[0.9983394,0.0003642316,0.0001532954,0.0003186245,0.0007095761,0.0001149062],"domain_scores_gemma":[0.9988846,0.0004686048,0.0001149402,0.0001436843,0.0003219415,0.00006616638],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0009829557,0.0002031588,0.001506133,0.003342985,0.0002024296,0.0003626214,0.000320473,0.03355664,0.07977616,0.1205376,0.139952,0.6192567],"study_design_scores_gemma":[0.000351089,0.0004918518,0.000483711,0.000283299,0.0001153794,0.001087944,0.0000758639,0.1230011,0.07813271,0.132179,0.6636547,0.0001433889],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001879701,0.0007903631,0.9591559,0.0001714315,0.0001967084,0.0002385633,0.002028494,0.02459946,0.01093932],"genre_scores_gemma":[0.02552166,0.0009604548,0.9507444,0.0004401805,0.0000674284,0.001441981,0.004503367,0.005166776,0.01115381],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04944803,"threshold_uncertainty_score":0.1654201,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02351071718670648,"score_gpt":0.2391708937850477,"score_spread":0.2156601765983412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}