{"id":"W2165324648","doi":"10.1016/j.cancergen.2014.09.013","title":"Integrative Genomic Analyses of Atypical Teratoid Rhabdoid Tumours (ATRTs)","year":2014,"lang":"en","type":"article","venue":"Cancer Genetics","topic":"Chromatin Remodeling and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Sanger sequencing; Biology; Genomics; Ion semiconductor sequencing; Computational biology; Genotyping; Exome sequencing; Genetics; Exome; Atypical teratoid rhabdoid tumor; Copy number analysis; Locus (genetics); Genome; Copy-number variation; DNA sequencing; Genotype; Gene; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008554336,0.0001643305,0.0002123229,0.00003330954,0.0000422326,0.00001288513,0.0002061921,0.0001126274,0.00005164684],"category_scores_gemma":[0.00003478945,0.0001405803,0.0001210571,0.00007869337,0.0001171179,0.000001353755,0.00007441625,0.00008165383,0.000005310451],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003324195,"about_ca_system_score_gemma":0.0001427745,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006736205,"about_ca_topic_score_gemma":0.0001235501,"domain_scores_codex":[0.9990937,0.00005603637,0.000250281,0.0002958353,0.0001140708,0.0001900845],"domain_scores_gemma":[0.9993137,0.00001115763,0.0001143172,0.0003413962,0.0001416115,0.00007786873],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007240778,0.00002672488,0.006643928,0.00002532571,0.0000677744,2.745178e-7,0.00009734104,0.004650339,0.9704473,0.00003321001,0.00234046,0.01559493],"study_design_scores_gemma":[0.0004268394,0.0002338517,0.007330335,0.00003957678,0.00006387506,0.000003953547,0.0000705981,0.004998678,0.968359,0.0001638534,0.01808267,0.0002267874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9818109,0.006466608,0.01043808,0.00007111601,0.0002134935,0.00008520239,0.00003239466,0.000009331451,0.0008728539],"genre_scores_gemma":[0.9944808,0.00196405,0.002470379,0.0002349421,0.0004423757,0.00001915109,0.00003744364,0.00002558665,0.0003252202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01574221,"threshold_uncertainty_score":0.5732697,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0212395547430882,"score_gpt":0.3273922419014223,"score_spread":0.3061526871583341,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}