{"id":"W2165401419","doi":"10.1099/ijs.0.000251","title":"Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources","year":2015,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Children's Health Foundation; University of Queensland; University of Oxford; National Health and Medical Research Council; Universiteit Gent; Cystic Fibrosis Canada; Wellcome Trust; Menzies School of Health Research; Children's Medical Research","keywords":"Biology; Burkholderia cepacia complex; Burkholderia; 16S ribosomal RNA; Microbiology; Burkholderia pseudomallei; Sequence analysis; Phylogenetic tree; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005516603,0.0003849675,0.001022106,0.0004011005,0.0001969718,0.0001240753,0.0002306127,0.0002138015,0.000341309],"category_scores_gemma":[0.0001004572,0.0003143013,0.000157722,0.00007638136,0.0005922172,0.0003157279,0.0002288305,0.000306149,0.00001425893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002781862,"about_ca_system_score_gemma":0.0001034434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004691052,"about_ca_topic_score_gemma":0.00003354982,"domain_scores_codex":[0.9975324,0.000153489,0.001257234,0.0004063696,0.0003440173,0.0003065166],"domain_scores_gemma":[0.9981304,0.00017524,0.0007969725,0.0002265532,0.0003183405,0.0003524343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002484268,0.0003743387,0.04258105,0.0005654835,0.0009747812,0.00008381634,0.001059372,0.000010343,0.9497303,0.0005927242,0.003748404,0.00003097195],"study_design_scores_gemma":[0.05235305,0.00478096,0.6508694,0.01785461,0.00398795,0.115744,0.02819956,0.0008150354,0.0177477,0.002743622,0.101853,0.00305106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913211,0.00389991,0.0006748266,0.001141279,0.001677172,0.0004729659,0.000577204,0.00002589576,0.0002096326],"genre_scores_gemma":[0.9946076,0.0002962463,0.002620406,0.0002545577,0.001538239,0.00001639176,0.0002911591,0.0000335464,0.0003418193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9319826,"threshold_uncertainty_score":0.9999309,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04787911461107428,"score_gpt":0.2782324196666295,"score_spread":0.2303533050555552,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}