{"id":"W2165649953","doi":"10.1093/nar/gkr916","title":"YMDB: the Yeast Metabolome Database","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":194,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Metabolome; Metabolomics; Biology; Database; Yeast; Saccharomyces cerevisiae; Metabolite; Proteome; Biochemistry; Computational biology; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001255805,0.002667934,0.002700524,0.00580889,0.00132669,0.003922596,0.004190641,0.001746961,0.03034808],"category_scores_gemma":[0.002942298,0.0009793316,0.001348105,0.008576221,0.0002719901,0.002896697,0.003250238,0.001614713,0.05487062],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008871788,"about_ca_system_score_gemma":0.002692947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005704847,"about_ca_topic_score_gemma":0.004562413,"domain_scores_codex":[0.9991837,0.0001205034,0.0001956181,0.0001888246,0.0002147148,0.0000966073],"domain_scores_gemma":[0.9988191,0.0001385724,0.0001375364,0.0002845549,0.0004142655,0.0002060874],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001488059,0.000155205,0.002233299,0.005092416,0.0003152124,0.0006568084,0.0001667255,0.002186458,0.01096481,0.0058228,0.9101819,0.06073619],"study_design_scores_gemma":[0.0003029494,0.00009370564,0.002975257,0.0004844053,0.000165468,0.0005741943,0.0001582063,0.00498319,0.006454827,0.008269321,0.9754046,0.0001337845],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.002705765,0.003987126,0.01177515,0.0004007331,0.0002352518,0.0002290003,0.9397593,0.03200646,0.00890119],"genre_scores_gemma":[0.003169525,0.001723306,0.009523023,0.0001396226,0.00003243266,0.0001949803,0.9832291,0.0009356588,0.001052338],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.03034808,"threshold_uncertainty_score":0.1015245,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08675998588748086,"score_gpt":0.3380057465262528,"score_spread":0.2512457606387719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}