{"id":"W2165649953","doi":"10.1093/nar/gkr916","title":"YMDB: the Yeast Metabolome Database","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":194,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Metabolome; Metabolomics; Biology; Database; Yeast; Saccharomyces cerevisiae; Metabolite; Proteome; Biochemistry; Computational biology; Bioinformatics; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001425537,0.0001417326,0.0001567227,0.0001057717,0.0003624039,0.00003765346,0.0006948692,0.00009341692,0.0005175084],"category_scores_gemma":[0.000358771,0.00009334315,0.00008994943,0.0003597794,0.0004254887,0.000005845092,0.0007998087,0.000329873,0.0002398825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001187338,"about_ca_system_score_gemma":0.00006790475,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009450497,"about_ca_topic_score_gemma":0.000038759,"domain_scores_codex":[0.9982308,0.0002292063,0.0001715779,0.0004151483,0.0004015997,0.0005517405],"domain_scores_gemma":[0.9987295,0.00002331318,0.00003578862,0.0008885816,0.0002104273,0.0001123419],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001917986,0.0001770826,0.004508522,0.00001764136,0.0002332945,0.00001346316,0.0003646937,2.595721e-7,0.9277201,0.01437786,0.04676865,0.005626602],"study_design_scores_gemma":[0.0005279612,0.0003733792,0.02060996,0.000006410806,0.00002805253,0.00002065252,0.0008502963,0.00001800498,0.2355321,0.001653751,0.7401195,0.0002598792],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9262774,0.003778311,0.0003290053,0.0005147236,0.0002354289,0.0003417518,0.00007400555,0.00002076199,0.06842864],"genre_scores_gemma":[0.9926553,0.001753873,0.001310402,0.0001803683,0.0003494796,0.00005815243,0.00003537761,0.00003141788,0.003625623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6933509,"threshold_uncertainty_score":0.5666354,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08675998588748086,"score_gpt":0.3380057465262528,"score_spread":0.2512457606387719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}