{"id":"W2165758921","doi":"10.1105/tpc.112.097261","title":"Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements","year":2012,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":177,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Ustilago; Genome; Genetics; Transposable element; Smut; Synteny; Hordeum vulgare; Gene; Genome evolution; Botany; Poaceae","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004498201,0.0002100443,0.0001139621,0.0003897671,0.0001543914,0.0001767339,0.0001179482,0.0001327096,0.001211818],"category_scores_gemma":[0.0001033557,0.00007505672,0.0001911586,0.0002474057,0.00008143254,0.00006670921,0.000134614,0.0001287813,0.0002598706],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002618848,"about_ca_system_score_gemma":0.0001152552,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002276654,"about_ca_topic_score_gemma":0.003944968,"domain_scores_codex":[0.9999449,0.000004723276,0.000003391727,0.00001991291,0.00001229842,0.00001482112],"domain_scores_gemma":[0.9999335,0.0000115887,0.00002088579,0.00000549384,0.000005911188,0.00002256213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002171682,0.000009623209,0.001379563,0.00002812508,0.000009439574,0.00007916694,0.00003743613,0.00002772625,0.9963606,0.00006426303,0.0000274638,0.00175954],"study_design_scores_gemma":[0.00004322657,0.0004042371,0.5460632,0.00002636437,0.00009610633,0.001709119,0.0002583965,0.001277618,0.441496,0.0001622095,0.008450497,0.00001300442],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975812,0.0003600826,0.00046291,0.00001305384,0.000005120746,0.000004028072,0.0008125292,0.00002475342,0.0007362891],"genre_scores_gemma":[0.9934171,0.0002084494,0.0007604123,0.00002793416,0.000002362976,0.000008638741,0.003890251,0.00001701558,0.001667737],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002276654,"threshold_uncertainty_score":0.004526794,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03559403843952903,"score_gpt":0.2107641964610737,"score_spread":0.1751701580215447,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}