{"id":"W2165759219","doi":"10.1101/gr.112169.110","title":"Comparative genomics of citric-acid-producing<i>Aspergillus niger</i>ATCC 1015 versus enzyme-producing CBS 513.88","year":2011,"lang":"en","type":"article","venue":"Genome Research","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":367,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Lawrence Berkeley National Laboratory; Biomass Program; Los Alamos National Laboratory; Biological and Environmental Research; Office of Science; Lawrence Livermore National Laboratory; U.S. Department of Energy","keywords":"Biology; Genetics; Aspergillus niger; Genome; Gene; Transcriptome; Reference genome; Whole genome sequencing; Single-nucleotide polymorphism; Genotype; Biochemistry; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008652217,0.0002806676,0.0002749507,0.0003545707,0.000139585,0.0003437297,0.0001694358,0.0001846711,0.0004297821],"category_scores_gemma":[0.0001549002,0.0001212184,0.0003863383,0.000580542,0.0001050783,0.0001113803,0.0001396052,0.0002896457,0.0002362365],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000265879,"about_ca_system_score_gemma":0.0001624931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00293376,"about_ca_topic_score_gemma":0.002017885,"domain_scores_codex":[0.999904,0.00001468293,0.00001194846,0.0000306704,0.00002291695,0.00001573848],"domain_scores_gemma":[0.9998674,0.00003725812,0.00003018849,0.00001120586,0.00001978311,0.00003415048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001149486,0.00001968194,0.0005811475,0.00002996062,0.000006120695,0.00007939285,0.00002947933,0.000099132,0.9980848,0.00002857856,0.00001789003,0.000908997],"study_design_scores_gemma":[0.00004948134,0.001044223,0.4122503,0.00007164069,0.0002259769,0.002029198,0.0008104058,0.00432093,0.5727508,0.0002811523,0.006124525,0.00004140109],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995101,0.0004419822,0.0007655231,0.00004172097,0.00000809409,0.00001891736,0.002457714,0.00002865978,0.001136332],"genre_scores_gemma":[0.987824,0.0004785458,0.002241287,0.00007118767,0.000006496369,0.00002908698,0.008073633,0.00003265715,0.00124317],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00293376,"threshold_uncertainty_score":0.005833387,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1493636227696736,"score_gpt":0.3502610496640595,"score_spread":0.2008974268943859,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}