{"id":"W2165907518","doi":"10.1186/1742-4690-10-1","title":"Attenuation of multiple Nef functions in HIV-1 elite controllers","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"International Development Research Centre; Canadian Institutes of Health Research; Harvard University Center for AIDS Research; Harvard University; Center for AIDS Research, University of Washington; Bill and Melinda Gates Foundation","keywords":"Viremia; Infectivity; Human immunodeficiency virus (HIV); Viral replication; Immune system; Biology; Virology; Phenotype; Immunology; CD74; Virus; Cell biology; Genetics; Gene; T cell; MHC class II","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004301462,0.0003005017,0.000228652,0.0005102696,0.0002933824,0.0005297874,0.0002220803,0.0003013484,0.001832073],"category_scores_gemma":[0.0008641882,0.00007543544,0.0001169579,0.0002089933,0.0001856342,0.0002850314,0.0003082931,0.0003954472,0.0001433886],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002371891,"about_ca_system_score_gemma":0.0001094596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005898123,"about_ca_topic_score_gemma":0.0004550911,"domain_scores_codex":[0.9997773,0.00002876171,0.00001973987,0.0000384686,0.00005754766,0.00007818551],"domain_scores_gemma":[0.9994836,0.0001171045,0.00009376249,0.0000554653,0.00007462249,0.0001754372],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00175842,0.0006503237,0.08895374,0.00006715197,0.00004864326,0.001082143,0.0002398053,0.0002723857,0.874992,0.0003130051,0.0002183204,0.03140404],"study_design_scores_gemma":[0.0002377624,0.009792027,0.648847,0.00005293653,0.0001801572,0.01425118,0.000482433,0.003397379,0.3170557,0.0003995615,0.005274142,0.00002956153],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994439,0.0001058581,0.0001130942,0.000004331068,0.000001415993,0.000007560687,0.00003322011,0.000003976383,0.0002864808],"genre_scores_gemma":[0.9989486,0.00006880217,0.0002016833,0.00002183247,0.000005675096,0.00001017058,0.0002081463,0.000004967811,0.0005299881],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001832073,"threshold_uncertainty_score":0.006128907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01113199152665109,"score_gpt":0.2316547561095162,"score_spread":0.2205227645828651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}