{"id":"W2165907518","doi":"10.1186/1742-4690-10-1","title":"Attenuation of multiple Nef functions in HIV-1 elite controllers","year":2013,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Simon Fraser University","funders":"International Development Research Centre; Canadian Institutes of Health Research; Harvard University Center for AIDS Research; Harvard University; Center for AIDS Research, University of Washington; Bill and Melinda Gates Foundation","keywords":"Viremia; Infectivity; Human immunodeficiency virus (HIV); Viral replication; Immune system; Biology; Virology; Phenotype; Immunology; CD74; Virus; Cell biology; Genetics; Gene; T cell; MHC class II","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001270455,0.00009304667,0.0002439509,0.0001876099,0.00004923042,0.000002777972,0.00008124845,0.0001855045,0.001833917],"category_scores_gemma":[0.0001773626,0.0000778758,0.00006179679,0.0001181445,0.0001817284,0.00006382218,0.0000328964,0.0001915823,0.006785657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004833343,"about_ca_system_score_gemma":0.00003954441,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007642538,"about_ca_topic_score_gemma":0.0002078712,"domain_scores_codex":[0.9989802,0.000223531,0.0002411467,0.0001862845,0.0000257332,0.0003431658],"domain_scores_gemma":[0.9993854,0.0002695178,0.00006845871,0.0001953436,0.00005700519,0.00002427937],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002970808,0.0002614436,0.616281,0.000008049055,0.0001576239,0.000004807048,0.0001465736,0.00005666587,0.3668191,0.0003315412,0.005657128,0.009978953],"study_design_scores_gemma":[0.007529252,0.0006224106,0.9658548,0.000009210362,0.00002248071,0.00001760365,0.0001883828,0.0001135237,0.00339606,0.0001176898,0.02201703,0.0001115424],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946491,0.0008583706,0.0003275218,0.001047662,0.0001579995,0.0003925413,0.00006841497,0.00002228778,0.002476113],"genre_scores_gemma":[0.9962082,0.00005239886,0.00006164891,0.00008701186,0.0000120844,0.0001217418,0.0003163493,0.000007150502,0.003133441],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.363423,"threshold_uncertainty_score":0.9990785,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01113199152665109,"score_gpt":0.2316547561095162,"score_spread":0.2205227645828651,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}