{"id":"W2165991214","doi":"10.1128/genomea.00491-14","title":"Draft Genome Sequence of Raoultella ornithinolytica TNT, a Trinitrotoluene-Denitrating and Plant Growth-Promoting Strain Isolated from Explosive-Contaminated Soil","year":2014,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Thompson Rivers University","funders":"","keywords":"Trinitrotoluene; Whole genome sequencing; Strain (injury); Biology; Bioremediation; Microbiology; Genome; Bacteria; Explosive material; Gene; Chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005645082,0.0002787117,0.0004275594,0.00006307374,0.0004284759,0.00003353135,0.0005036797,0.0001809112,0.001401708],"category_scores_gemma":[0.0001096289,0.0002811298,0.00005470216,0.0002111089,0.000388119,0.0001978858,0.0004657441,0.0003725195,0.0001543077],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009934723,"about_ca_system_score_gemma":0.00002261773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001002095,"about_ca_topic_score_gemma":0.0005206447,"domain_scores_codex":[0.997817,0.000477295,0.0005459659,0.0004717793,0.0001807423,0.0005071558],"domain_scores_gemma":[0.998907,0.0002238583,0.0003304982,0.0003689825,0.00003967213,0.0001299428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001128121,0.0001135431,0.009199928,0.00002938279,0.00007232607,0.00001036423,0.004089661,0.00008252151,0.9858109,0.0000321083,0.00001652362,0.0004298698],"study_design_scores_gemma":[0.03265845,0.01465732,0.6390471,0.001038059,0.00122876,0.0004224348,0.009834823,0.05017007,0.1742726,0.0274337,0.04023986,0.008996762],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963959,0.00004791768,0.0002840726,0.00005521981,0.00008232705,0.0004288158,0.0007591297,0.00004280551,0.001903752],"genre_scores_gemma":[0.9978425,0.00005241974,0.000515431,0.0003277238,0.00003757926,0.00002499564,0.001081015,0.00002104375,0.00009728695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8115383,"threshold_uncertainty_score":0.9999641,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01786586644739228,"score_gpt":0.2199241720865135,"score_spread":0.2020583056391212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}