{"id":"W2166105683","doi":"10.1002/prot.21546","title":"High incidence of ubiquitin‐like domains in human ubiquitin‐specific proteases","year":2007,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Deubiquitinating enzyme; Ubiquitin; Proteases; Proteasome; Computational biology; Biology; Ubiquitins; Ubiquitin-Protein Ligases; Enzyme; Ubiquitin ligase; Subcellular localization; Protein domain; Ubiquitin-conjugating enzyme; Biochemistry; Cell biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007043428,0.0002139426,0.0003385265,0.001299749,0.0002974116,0.0007118603,0.0002227217,0.000661729,0.001083639],"category_scores_gemma":[0.001565907,0.0001879416,0.0002971701,0.001727066,0.0003584185,0.0004673837,0.0004932125,0.0003233452,0.0008685919],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001745746,"about_ca_system_score_gemma":0.0001949538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002484008,"about_ca_topic_score_gemma":0.0002677428,"domain_scores_codex":[0.9989537,0.0001604544,0.0001218991,0.0003033475,0.0003524216,0.0001081054],"domain_scores_gemma":[0.9988198,0.0003563316,0.00041287,0.0001726072,0.0001102603,0.0001282248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00293256,0.000274336,0.4395891,0.0008242998,0.0003001812,0.005223867,0.0004577369,0.001559365,0.3860436,0.002859766,0.001481666,0.1584535],"study_design_scores_gemma":[0.00008474092,0.001113971,0.5792817,0.0001506617,0.0004377617,0.05810671,0.0007344091,0.004152318,0.3024701,0.004527764,0.04886578,0.00007400185],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982144,0.009026115,0.005840064,0.0001410198,0.00002685026,0.0000231953,0.0009352249,0.00014652,0.00171698],"genre_scores_gemma":[0.9906748,0.002979212,0.00384775,0.0001104465,0.00003873681,0.00001222685,0.001547111,0.00001736508,0.0007724636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299749,"threshold_uncertainty_score":0.003724992,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008354993592796477,"score_gpt":0.2281028190768516,"score_spread":0.2197478254840551,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}