{"id":"W2166132128","doi":"10.1128/mcb.01383-08","title":"Preferential Epigenetic Suppression of the Autonomous MusD over the Nonautonomous ETn Mouse Retrotransposons","year":2009,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Retrotransposon; Biology; Gene silencing; Epigenetics; Long terminal repeat; Genetics; Gene; Transposable element; CpG site; Histone; DNA methylation; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008089534,0.000124004,0.0001387383,0.000006546341,0.0002099955,0.00001863866,0.0002850373,0.0001310663,0.0001847471],"category_scores_gemma":[0.00001299434,0.00003778971,0.0001289449,0.000124058,0.0001264886,0.00001326582,0.00006744095,0.0001139186,0.000002767769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006330723,"about_ca_system_score_gemma":0.00001229676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001086769,"about_ca_topic_score_gemma":0.00009623918,"domain_scores_codex":[0.9991324,0.000164377,0.0001864823,0.000233077,0.0000823935,0.0002012972],"domain_scores_gemma":[0.9996822,0.00003666038,0.00007449596,0.0001315502,0.00002836376,0.00004676784],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000009662812,0.0000532183,0.00144139,0.000001587217,0.00001134615,7.477944e-7,0.00007890843,0.00001419783,0.9884463,0.0014815,0.00001388946,0.008447271],"study_design_scores_gemma":[0.0002432855,0.0004503196,0.1971371,0.000008879971,0.00005661596,0.000008052849,0.00003269866,0.000159349,0.7878137,0.003915633,0.0100041,0.0001703015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966469,0.000675165,0.0001375048,0.001754735,0.0001031614,0.0002412146,0.00005465437,0.00001608405,0.0003705893],"genre_scores_gemma":[0.9994094,0.00003120586,0.00003565599,0.0002620175,0.00006054481,0.000007920096,0.000050367,9.787174e-7,0.000141946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2006326,"threshold_uncertainty_score":0.2022851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00759990232612145,"score_gpt":0.1983625371628927,"score_spread":0.1907626348367713,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}