{"id":"W2166179915","doi":"10.1093/gbe/evt116","title":"Homologous Recombination Drives Both Sequence Diversity and Gene Content Variation in Neisseria meningitidis","year":2013,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"Wayne State University; Sanofi","keywords":"Biology; Homologous recombination; Genetics; Antigenic variation; Recombination; Neisseria meningitidis; Gene; Genome; Neisseria; Ectopic recombination; Genetic recombination; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001534514,0.00009555575,0.0001454186,0.00009000915,0.0004482006,0.000009453135,0.00004365841,0.0002316946,0.0001154096],"category_scores_gemma":[0.00003036834,0.00008692952,0.00001642028,0.00007281711,0.0001140438,0.000180974,0.0001495961,0.00009611139,0.00003250362],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006095324,"about_ca_system_score_gemma":0.00001053372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00326873,"about_ca_topic_score_gemma":0.0001147829,"domain_scores_codex":[0.9993041,0.0001479216,0.0001520587,0.0002241403,0.000004057423,0.0001676977],"domain_scores_gemma":[0.9997544,0.00003498142,0.00007345622,0.00007389782,0.00004759267,0.00001566287],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002663241,0.00002791006,0.2117444,0.000003677273,0.00002348264,1.175404e-7,0.0003244971,9.705583e-7,0.7844425,0.002653996,0.000008625912,0.0007431678],"study_design_scores_gemma":[0.0006464855,0.00019848,0.9929783,0.000004375883,0.00001355109,0.00004757466,0.00009050058,0.00002020545,0.0009640594,0.004815212,0.0001201647,0.0001010851],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997112,0.001383295,0.000548958,0.000203499,0.0004498797,0.000211399,0.00001344754,0.00003151862,0.00004598748],"genre_scores_gemma":[0.9992911,0.0003089685,0.00007716815,0.00002139294,0.0000222032,0.00002498343,0.0000991593,0.00000320495,0.0001517781],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7834784,"threshold_uncertainty_score":0.4941364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02473850627622199,"score_gpt":0.2239661963836315,"score_spread":0.1992276901074096,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}