{"id":"W2166179915","doi":"10.1093/gbe/evt116","title":"Homologous Recombination Drives Both Sequence Diversity and Gene Content Variation in Neisseria meningitidis","year":2013,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"Wayne State University; Sanofi","keywords":"Biology; Homologous recombination; Genetics; Antigenic variation; Recombination; Neisseria meningitidis; Gene; Genome; Neisseria; Ectopic recombination; Genetic recombination; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003013527,0.0001566326,0.0001840646,0.0003982814,0.0001567442,0.0002225521,0.0001784727,0.0002503655,0.0002414703],"category_scores_gemma":[0.0006031429,0.0001316585,0.0001927991,0.0003386608,0.0002143316,0.000184851,0.0002302262,0.0002688942,0.00008430322],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002251777,"about_ca_system_score_gemma":0.0001740929,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000886801,"about_ca_topic_score_gemma":0.001427078,"domain_scores_codex":[0.9997678,0.00005364974,0.00001554542,0.00005789335,0.0000649311,0.00004018616],"domain_scores_gemma":[0.9997452,0.0000742504,0.0001030574,0.00003525436,0.00002204639,0.00002015987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006278733,0.00002847033,0.01037655,0.00005260672,0.00001691048,0.0001467598,0.000107079,0.0001517514,0.9809896,0.0002643347,0.00002817613,0.007774881],"study_design_scores_gemma":[0.00003757268,0.0007217509,0.4665925,0.0000434089,0.0001513498,0.002924368,0.0005783042,0.004890894,0.5154429,0.001408237,0.007175035,0.00003371062],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958104,0.0008705364,0.002469815,0.00002980939,0.000004102787,0.00001493361,0.0000755764,0.00002065545,0.0007041802],"genre_scores_gemma":[0.9972958,0.0003041137,0.002036293,0.0000278698,0.000003879101,0.000007766631,0.0001240748,0.000005925639,0.0001941741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000886801,"threshold_uncertainty_score":0.001763284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02473850627622199,"score_gpt":0.2239661963836315,"score_spread":0.1992276901074096,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}