{"id":"W2166535160","doi":"10.1101/gr.4871006","title":"Sequencing and analysis of 10,967 full-length cDNA clones from<i>Xenopus laevis</i>and<i>Xenopus tropicalis</i>reveals post-tetraploidization transcriptome remodeling","year":2006,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"National Cancer Institute; National Institutes of Health; Lawrence Livermore National Laboratory; Michael Smith Health Research BC; National Human Genome Research Institute; U.S. Department of Energy","keywords":"Biology; Xenopus; Genetics; Subfunctionalization; Gene; Complementary DNA; Genome; Molecular biology; Gene family","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006780425,0.0002198483,0.0004528176,0.0003669611,0.0002345124,0.00006291232,0.0002138226,0.0001799588,0.0000331836],"category_scores_gemma":[0.00009542911,0.0002129663,0.0001332298,0.0005917086,0.0002408088,0.000003340739,0.000179361,0.000158727,0.000002259003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003965634,"about_ca_system_score_gemma":0.00008378056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001118642,"about_ca_topic_score_gemma":0.0003515522,"domain_scores_codex":[0.9977788,0.000227726,0.0004797393,0.0006490073,0.0003659353,0.0004988],"domain_scores_gemma":[0.9987921,0.00009117767,0.00009801119,0.0004110227,0.0004832653,0.0001244054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001120747,0.00003650934,0.006986976,0.00004989726,0.0004443951,0.000002776866,0.0002897169,0.0007905401,0.9904794,0.0001008801,0.00002751852,0.0006793254],"study_design_scores_gemma":[0.003886413,0.002847787,0.3521985,0.0001097574,0.002302853,0.00003769064,0.002818302,0.007442202,0.5981746,0.004216078,0.02392956,0.002036306],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9812776,0.01686454,0.0006641372,0.0001798981,0.0000370106,0.00026042,0.0004742618,0.000005328059,0.0002367391],"genre_scores_gemma":[0.993279,0.004164871,0.001526496,0.00004596742,0.0001986764,0.00001673859,0.0004698664,0.00003228978,0.0002660952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3923048,"threshold_uncertainty_score":0.8684515,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03024494628718778,"score_gpt":0.2886007149339817,"score_spread":0.2583557686467939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}