{"id":"W2166542841","doi":"10.1093/bioinformatics/btq562","title":"GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":661,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Plug-in; Computer science; Function (biology); Complement (music); Java; Set (abstract data type); Gene; Programming language; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001057865,0.002008568,0.001290755,0.003010206,0.0009469574,0.001387461,0.003786979,0.001623349,0.08352312],"category_scores_gemma":[0.00600103,0.001125276,0.001161151,0.002061949,0.0004044086,0.001652693,0.001535822,0.00242784,0.05946521],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006586026,"about_ca_system_score_gemma":0.001676284,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005217165,"about_ca_topic_score_gemma":0.007091139,"domain_scores_codex":[0.9992903,0.00009848188,0.00003470285,0.0001846758,0.0003176934,0.00007415478],"domain_scores_gemma":[0.9981109,0.0007864132,0.0001141788,0.0003293494,0.0004085807,0.0002505768],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006519351,0.0001103824,0.001697928,0.001218457,0.0001944108,0.0003954358,0.0001296496,0.002941951,0.01623827,0.00492838,0.8219919,0.1495013],"study_design_scores_gemma":[0.0005200275,0.0001148503,0.005797999,0.0003693097,0.0001955655,0.0009801065,0.00007515257,0.09967504,0.09751061,0.03635606,0.7579823,0.0004228016],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.006848556,0.001205661,0.2302029,0.001043206,0.0008122255,0.0003105038,0.09388879,0.6519182,0.01376996],"genre_scores_gemma":[0.1026044,0.002119033,0.4339016,0.00173202,0.0005917316,0.002916627,0.3114508,0.09961162,0.04507217],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08352312,"threshold_uncertainty_score":0.2794127,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007931295299022024,"score_gpt":0.200528499500222,"score_spread":0.1925972042011999,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}