{"id":"W2166558111","doi":"10.1128/jb.183.22.6688-6693.2001","title":"Precise Deletion of <i>tagD</i> and Controlled Depletion of Its Product, Glycerol 3-Phosphate Cytidylyltransferase, Leads to Irregular Morphology and Lysis of <i>Bacillus subtilis</i> Grown at Physiological Temperature","year":2001,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; McMaster University","funders":"","keywords":"Bacillus subtilis; Teichoic acid; Biology; Mutant; Lysis; Biochemistry; Gene product; Gene; Locus (genetics); Glycerol; Biosynthesis; Phenotype; Gene expression; Molecular biology; Genetics; Bacteria; Peptidoglycan","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003548512,0.0002026354,0.0009162386,0.00009168148,0.00004399724,0.00000391725,0.0001358331,0.0002134154,0.00001555393],"category_scores_gemma":[0.0001349565,0.0001542203,0.0001678811,0.00009468326,0.0002607762,0.000003815312,0.0001078478,0.0001033423,3.030882e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001197381,"about_ca_system_score_gemma":0.00004261666,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008170671,"about_ca_topic_score_gemma":0.00001564309,"domain_scores_codex":[0.9984729,0.0001855509,0.0007539573,0.0002866247,0.00009759671,0.0002034198],"domain_scores_gemma":[0.998744,0.0000472684,0.00050545,0.0001889036,0.0004241173,0.00009024943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005783612,0.0001006744,0.01673526,0.00006259712,0.0002296626,0.000006032506,0.00008577573,0.0001857564,0.9759195,0.000009984788,0.00008888235,0.0007922772],"study_design_scores_gemma":[0.004295579,0.003792578,0.139035,0.00003715179,0.0001656322,0.000437799,0.00003368061,0.000009556933,0.8507388,0.00003911991,0.001249411,0.0001656177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926589,0.006462154,0.00007047549,0.0002985029,0.0001401456,0.0003074421,0.00004632363,0.000001026766,0.00001509637],"genre_scores_gemma":[0.9897027,0.009579041,0.0004165625,0.0001123202,0.0001169259,0.000009760155,0.0000179892,0.00001251128,0.00003216784],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1251807,"threshold_uncertainty_score":0.6288919,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008247727588287308,"score_gpt":0.2149754409713609,"score_spread":0.2067277133830736,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}