{"id":"W2166739272","doi":"10.1093/molbev/msl103","title":"Diversifying Selection Drives the Evolution of the Type III Secretion System Pilus of Pseudomonas syringae","year":2006,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":70,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canada Research Chairs","keywords":"Biology; Pseudomonas syringae; Operon; Pilus; Genetics; Type three secretion system; Negative selection; Virulence; Pathogenicity island; Gene; Pilin; Type VI secretion system; Evolutionary biology; Mutant; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005270344,0.000270627,0.0003571899,0.0007036921,0.0004345518,0.0005015819,0.0002152404,0.0003418483,0.0003251109],"category_scores_gemma":[0.001121344,0.0002159305,0.0002010486,0.0004892848,0.0004142431,0.0002997092,0.000571742,0.0004213399,0.0001386289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003543906,"about_ca_system_score_gemma":0.0002067719,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005834453,"about_ca_topic_score_gemma":0.0008692374,"domain_scores_codex":[0.999666,0.00008962416,0.00002283822,0.00008743596,0.00006946508,0.00006462118],"domain_scores_gemma":[0.9995174,0.0001602488,0.0001092094,0.00004976728,0.00005787825,0.0001054036],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003728237,0.0001253468,0.1496035,0.00007834831,0.00013304,0.0009500543,0.0007670404,0.00193118,0.8283603,0.0005440806,0.00006930614,0.01706509],"study_design_scores_gemma":[0.00004876834,0.0006217257,0.9337444,0.00002970127,0.0001605436,0.002382212,0.001135154,0.01387129,0.0450645,0.001161017,0.00171593,0.00006466155],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994,0.00008460516,0.0003179711,0.00001340759,0.000001461934,0.000003595618,0.00001333085,0.000005683316,0.0001598496],"genre_scores_gemma":[0.9995058,0.00007693329,0.0002696234,0.00001719086,0.000003004426,0.000004368163,0.00005370497,0.000005796244,0.0000636101],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007036921,"threshold_uncertainty_score":0.002787292,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006088567486666681,"score_gpt":0.1875728006576653,"score_spread":0.1814842331709986,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}