{"id":"W2167155214","doi":"10.1186/1471-2105-10-192","title":"OrthoClusterDB: an online platform for synteny blocks","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC; Universities Space Research Association","keywords":"Synteny; Genome; Comparative genomics; Identification (biology); Biology; Block (permutation group theory); Visualization; Computational biology; Genomics; Computer science; Gene; Genetics; Data mining; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002971067,0.004041218,0.001816478,0.007041896,0.001399425,0.004713099,0.005500154,0.001549102,0.07377655],"category_scores_gemma":[0.006511527,0.002394195,0.001719669,0.005637419,0.0007727757,0.006102286,0.008291994,0.003007255,0.04820183],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001489095,"about_ca_system_score_gemma":0.002485976,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003604307,"about_ca_topic_score_gemma":0.002749103,"domain_scores_codex":[0.9980757,0.0002509877,0.0002198516,0.00050951,0.0007187302,0.0002251511],"domain_scores_gemma":[0.9973871,0.0009330122,0.0003058426,0.0005421382,0.0003894488,0.0004425175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.006089779,0.0003616009,0.004782268,0.004540572,0.0004278172,0.00118735,0.001378605,0.003253747,0.036992,0.01696862,0.748498,0.1755198],"study_design_scores_gemma":[0.001319933,0.0002382411,0.007083144,0.0007365835,0.0001956213,0.0009426509,0.0004989233,0.03242294,0.04195007,0.03619616,0.8779259,0.0004897735],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.007458787,0.002007863,0.150788,0.0005534485,0.000461726,0.0006624915,0.198628,0.6198416,0.01959804],"genre_scores_gemma":[0.04018293,0.001777095,0.2629039,0.000773194,0.0002325589,0.002218522,0.5612782,0.1162195,0.01441411],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07377655,"threshold_uncertainty_score":0.2468071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03838297489699107,"score_gpt":0.276687611470927,"score_spread":0.2383046365739359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}