{"id":"W2167155214","doi":"10.1186/1471-2105-10-192","title":"OrthoClusterDB: an online platform for synteny blocks","year":2009,"lang":"en","type":"article","venue":"BMC Bioinformatics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Michael Smith Health Research BC; Universities Space Research Association","keywords":"Synteny; Genome; Comparative genomics; Identification (biology); Biology; Block (permutation group theory); Visualization; Computational biology; Genomics; Computer science; Gene; Genetics; Data mining; Mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001721684,0.000189323,0.0001595369,0.00006232822,0.00007860194,0.00004624599,0.000265654,0.0001697639,0.00001320438],"category_scores_gemma":[0.000056969,0.0001700723,0.0001134594,0.00007444235,0.00003047505,0.00001694965,0.00005537779,0.00006379824,0.00001309172],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001620565,"about_ca_system_score_gemma":0.00007244393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001488741,"about_ca_topic_score_gemma":0.00003867382,"domain_scores_codex":[0.998984,0.000006712819,0.0003618817,0.0001662908,0.0001432838,0.0003378476],"domain_scores_gemma":[0.9991837,0.000009342451,0.0001239415,0.0004452663,0.0001092763,0.0001285461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001663411,0.003183131,0.007243247,0.001361123,0.0005973144,0.000009024368,0.003351867,0.007896173,0.1078246,0.001812196,0.0424761,0.8225818],"study_design_scores_gemma":[0.007539407,0.007953158,0.01055093,0.00009542498,0.0002198695,0.0001612873,0.003250424,0.6653719,0.027445,0.001129997,0.2741702,0.002112391],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.5485939,0.0003073973,0.4451663,0.0001996114,0.0003428044,0.001437364,0.0003410707,0.0001119345,0.00349962],"genre_scores_gemma":[0.1543781,0.0001206359,0.837382,0.001762828,0.0007863014,0.00003874164,0.003283192,0.00004652319,0.002201749],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.8204694,"threshold_uncertainty_score":0.6935347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03838297489699107,"score_gpt":0.276687611470927,"score_spread":0.2383046365739359,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}