{"id":"W2167155938","doi":"10.1101/gr.094607.109","title":"JBrowse: A next-generation genome browser","year":2009,"lang":"en","type":"article","venue":"Genome Research","topic":"Algorithms and Data Compression","field":"Computer Science","cited_by":776,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute; National Institutes of Health","keywords":"JavaScript; Upload; Computer science; Web server; Genome; Genome browser; Annotation; Zoom; Panning (audio); Biology; Rendering (computer graphics); Web browser; World Wide Web; The Internet; Genomics; Genetics; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001510609,0.0008037914,0.0006523883,0.001449629,0.0005907391,0.002097674,0.002461988,0.00120644,0.01744792],"category_scores_gemma":[0.003560039,0.0009719798,0.0008006937,0.001250328,0.0003123152,0.0025189,0.001512891,0.002285276,0.01403789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004862517,"about_ca_system_score_gemma":0.001337619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004970572,"about_ca_topic_score_gemma":0.008918373,"domain_scores_codex":[0.9992961,0.00007395936,0.00005077677,0.0001190432,0.0003971044,0.00006301326],"domain_scores_gemma":[0.9988624,0.0003264497,0.00006283149,0.0002548661,0.0003355402,0.0001579008],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005904399,0.0002641205,0.002683003,0.0009042242,0.0001479842,0.0005636583,0.0005291175,0.005866037,0.07081655,0.02374547,0.4246746,0.4692148],"study_design_scores_gemma":[0.0001188594,0.00005261862,0.001374131,0.0001250702,0.00004413291,0.001006391,0.00009505493,0.03433325,0.04498181,0.0123329,0.9053959,0.0001399525],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.005783373,0.001893238,0.7451709,0.0007279731,0.0004948317,0.0001730229,0.01368783,0.2193892,0.01267955],"genre_scores_gemma":[0.02629942,0.002509624,0.8671907,0.0007176566,0.0001214118,0.0003955478,0.05297352,0.02644542,0.02334657],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01744792,"threshold_uncertainty_score":0.0583691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2085239895237908,"score_gpt":0.3744306107962284,"score_spread":0.1659066212724375,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}