{"id":"W2167186416","doi":"10.1093/genetics/165.1.229","title":"Rare Deep-Rooting Y Chromosome Lineages in Humans: Lessons for Phylogeography","year":2003,"lang":"en","type":"article","venue":"Genetics","topic":"Forensic and Genetic Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"","keywords":"Haplogroup; Biology; Clade; Phylogeography; Evolutionary biology; Genetics; Phylogenetic tree; Gene; Haplotype; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001419279,0.0004003448,0.0007212554,0.0009837095,0.0006404851,0.0009170924,0.0004513025,0.0006533434,0.001059058],"category_scores_gemma":[0.002297883,0.0001835921,0.0001354732,0.0007586501,0.002638784,0.002020521,0.001541486,0.0009836653,0.0001415907],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002701823,"about_ca_system_score_gemma":0.000312315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008308063,"about_ca_topic_score_gemma":0.001617623,"domain_scores_codex":[0.9997336,0.0001147082,0.00001981974,0.00007747719,0.00002821206,0.00002613852],"domain_scores_gemma":[0.9985132,0.0009306157,0.0002320736,0.0001534393,0.00008269007,0.00008787978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007448188,0.00004574497,0.5243623,0.000870319,0.0001898461,0.003607871,0.008735579,0.008394384,0.03973559,0.05812271,0.0005483367,0.3546426],"study_design_scores_gemma":[0.000129973,0.0005078248,0.5796438,0.001252852,0.0002739682,0.0195793,0.01197771,0.01337209,0.0108069,0.3284283,0.03384295,0.0001843021],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9578875,0.01722606,0.01889178,0.002502509,0.00003304276,0.00001173783,0.0001110819,0.00003338106,0.003302928],"genre_scores_gemma":[0.9869862,0.007305491,0.005027629,0.0001513671,0.00006912222,0.000006740613,0.0000705857,0.000007641977,0.0003751625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001419279,"threshold_uncertainty_score":0.007505953,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02433467069687255,"score_gpt":0.3128159876055381,"score_spread":0.2884813169086655,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}