{"id":"W2167216473","doi":"10.1186/1471-2180-9-221","title":"Subgingival bacterial colonization profiles correlate with gingival tissue gene expression","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"National Institute of Dental and Craniofacial Research; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Michael Smith Health Research BC; Georgia Clinical and Translational Science Alliance; International Association for Dental Research","keywords":"Tannerella forsythia; Biology; Aggregatibacter actinomycetemcomitans; Treponema denticola; Periodontitis; Porphyromonas gingivalis; Actinomyces naeslundii; Actinomyces; Gene expression; Microbiology; Fusobacterium nucleatum; Eikenella corrodens; Dental plaque; Gene; Pathology; Genetics; Dentistry; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001531946,0.0002628431,0.0002978687,0.0004684756,0.0001989726,0.0004576602,0.00009347346,0.0002860067,0.001841955],"category_scores_gemma":[0.0003952163,0.0001296483,0.0001968405,0.0004359086,0.0002331301,0.0001662321,0.0003209864,0.0003452927,0.0004612089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001124427,"about_ca_system_score_gemma":0.0001133158,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003054048,"about_ca_topic_score_gemma":0.0004386985,"domain_scores_codex":[0.9997961,0.00002027253,0.00001532015,0.00006271437,0.00004824044,0.00005734001],"domain_scores_gemma":[0.9996401,0.00009773162,0.0001319686,0.00001938375,0.00005037081,0.00006040602],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001475828,0.0001053916,0.6051519,0.0001475682,0.00006468697,0.0002233488,0.000353008,0.0001051044,0.3800861,0.00003444758,0.0001347681,0.01211798],"study_design_scores_gemma":[0.000009765745,0.0003376165,0.9868513,0.000009860848,0.00005291808,0.0008135526,0.0003599569,0.0001804092,0.01093178,0.00007229699,0.0003757128,0.000004810994],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990767,0.0003743619,0.0002004686,0.00001448271,0.00000201758,0.000004675743,0.0001591704,0.000003369395,0.0001646848],"genre_scores_gemma":[0.9985573,0.0002802751,0.0005378362,0.00002356432,0.000007269262,0.00001628493,0.0003768262,0.000003283457,0.000197423],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001841955,"threshold_uncertainty_score":0.006161988,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.014595565364145,"score_gpt":0.2734052307190601,"score_spread":0.2588096653549151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}