{"id":"W2167216473","doi":"10.1186/1471-2180-9-221","title":"Subgingival bacterial colonization profiles correlate with gingival tissue gene expression","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":114,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"National Institute of Dental and Craniofacial Research; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Michael Smith Health Research BC; Georgia Clinical and Translational Science Alliance; International Association for Dental Research","keywords":"Tannerella forsythia; Biology; Aggregatibacter actinomycetemcomitans; Treponema denticola; Periodontitis; Porphyromonas gingivalis; Actinomyces naeslundii; Actinomyces; Gene expression; Microbiology; Fusobacterium nucleatum; Eikenella corrodens; Dental plaque; Gene; Pathology; Genetics; Dentistry; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002112442,0.0002548498,0.0003588157,0.0001280714,0.0002499455,0.00006459578,0.0003172895,0.0004382404,0.001934801],"category_scores_gemma":[0.00006068921,0.0002062455,0.00005962004,0.0001848541,0.0002337317,0.0001259734,0.00009349004,0.0003157336,0.000943671],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005945594,"about_ca_system_score_gemma":0.0001318968,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002692385,"about_ca_topic_score_gemma":0.0001163062,"domain_scores_codex":[0.9981724,0.0003523268,0.0003127253,0.0005394982,0.00005395136,0.0005690671],"domain_scores_gemma":[0.9992447,0.00007861509,0.0001388868,0.0003283487,0.0001252929,0.00008418791],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008683485,0.00008279876,0.01821812,0.00001784942,0.0000171133,0.00008871855,0.00007677142,0.00001624218,0.9755387,0.0001265456,0.004550216,0.0003985701],"study_design_scores_gemma":[0.002096677,0.0009566292,0.04120715,0.00006800391,0.00002605814,0.002018258,0.00002461584,0.00001606204,0.9263238,0.00007149452,0.02675241,0.0004388514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949406,0.0002501359,0.002086789,0.00009381039,0.001399763,0.0004548607,0.0001860369,0.0001434155,0.0004445419],"genre_scores_gemma":[0.9883235,0.00001717165,0.004316934,0.0001035394,0.0003939587,0.00001562597,0.001420155,0.00002709938,0.005381991],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04921492,"threshold_uncertainty_score":0.9998342,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.014595565364145,"score_gpt":0.2734052307190601,"score_spread":0.2588096653549151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}