{"id":"W2167286853","doi":"10.1128/jcm.02142-08","title":"Major <i>Mycobacterium tuberculosis</i> Lineages Associate with Patient Country of Origin","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ste. Anne's Hospital; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Restriction fragment length polymorphism; Mycobacterium tuberculosis; Biology; Genotype; Tuberculosis; Genetics; Clade; Lineage (genetic); Molecular epidemiology; Evolutionary biology; Phylogenetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004856687,0.0003381546,0.0003599627,0.0008700237,0.0004764737,0.0008298308,0.0003539564,0.0003434765,0.002363973],"category_scores_gemma":[0.001878502,0.0001643628,0.0002841699,0.001039515,0.0004517682,0.0002107008,0.0004760907,0.0004339849,0.000525517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007578412,"about_ca_system_score_gemma":0.0007509606,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06048197,"about_ca_topic_score_gemma":0.09684445,"domain_scores_codex":[0.9995628,0.00008543485,0.00003447038,0.00009650874,0.00006374868,0.0001570418],"domain_scores_gemma":[0.9983037,0.0002209993,0.0007929738,0.0001454333,0.0003057318,0.0002312312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0000980521,0.000007005533,0.9946666,0.00001091614,0.00001680851,0.0001334091,0.0001522353,0.00002581414,0.002431199,0.0000222152,0.0001349397,0.002300846],"study_design_scores_gemma":[0.000003047094,0.00004289298,0.9981635,0.000009490291,0.00001907248,0.0005579953,0.0002285137,0.00007945645,0.0004937037,0.00001466744,0.0003842527,0.00000352347],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996641,0.000748545,0.0003534336,0.0001021869,0.000006690578,0.00002799076,0.000510728,0.00001948025,0.001589925],"genre_scores_gemma":[0.9986858,0.0002732882,0.0003698033,0.0000512012,0.000007299425,0.000006111719,0.0003277613,0.00001021025,0.0002685475],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06048197,"threshold_uncertainty_score":0.1202598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03091747124689232,"score_gpt":0.375386294708101,"score_spread":0.3444688234612087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}