{"id":"W2167286853","doi":"10.1128/jcm.02142-08","title":"Major <i>Mycobacterium tuberculosis</i> Lineages Associate with Patient Country of Origin","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ste. Anne's Hospital; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Restriction fragment length polymorphism; Mycobacterium tuberculosis; Biology; Genotype; Tuberculosis; Genetics; Clade; Lineage (genetic); Molecular epidemiology; Evolutionary biology; Phylogenetics; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00226857,0.0001973911,0.001755498,0.0001522212,0.00003381963,0.000006316609,0.0001942111,0.0004424583,0.0001283842],"category_scores_gemma":[0.003408916,0.0001176523,0.0004573476,0.0001897031,0.0003269369,0.00007283593,0.00003839709,0.00110933,0.00001999599],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006127782,"about_ca_system_score_gemma":0.0003933086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000181509,"about_ca_topic_score_gemma":0.00001340287,"domain_scores_codex":[0.9961472,0.0006678614,0.002331745,0.0002409725,0.0001405822,0.0004716475],"domain_scores_gemma":[0.9957024,0.001567598,0.001381867,0.0002660725,0.0007365345,0.0003455223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01274825,0.002819268,0.6015866,0.000121878,0.001970681,0.0004843809,0.00009140234,0.00001733528,0.2720198,0.0001605195,0.08715661,0.02082328],"study_design_scores_gemma":[0.01069123,0.04822798,0.6219222,0.0008583688,0.0009321283,0.005925179,0.0001065065,0.0000208854,0.01241522,0.0002772411,0.2982051,0.0004179836],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9854524,0.0009719205,0.00004245693,0.01225103,0.0004746123,0.0001777825,0.00005223937,0.00001062604,0.0005669046],"genre_scores_gemma":[0.9862879,0.001506278,0.002430892,0.008885574,0.0007427729,0.000001185321,0.00002950397,0.00001515429,0.000100757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2596046,"threshold_uncertainty_score":0.481955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03091747124689232,"score_gpt":0.375386294708101,"score_spread":0.3444688234612087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}