{"id":"W2167292592","doi":"10.1111/nph.12693","title":"Simultaneous profiling of seed‐associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on <i><scp>T</scp>riticum</i> and <i><scp>B</scp>rassica</i> seeds","year":2014,"lang":"en","type":"article","venue":"New Phytologist","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":181,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Saskatchewan Research Council (Canada); University of Saskatchewan; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Microorganism; Microbiome; Epiphyte; Operational taxonomic unit; Orchidaceae; Botany; Bacteria; Metagenomics; Methylobacterium; Microbial ecology; Microbial population biology; Proteobacteria; Microbiology; 16S ribosomal RNA; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003668952,0.0004241491,0.0007218114,0.00006980108,0.0004820519,0.0002668529,0.0003477454,0.0002700099,0.00001860276],"category_scores_gemma":[0.002170812,0.0002344968,0.0001217417,0.0004576753,0.0003220615,0.0002363642,0.0001861591,0.0005392209,0.00003681189],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007631927,"about_ca_system_score_gemma":0.0000375203,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007127069,"about_ca_topic_score_gemma":0.0004935192,"domain_scores_codex":[0.997704,0.000290586,0.0006886444,0.0006052307,0.0001583699,0.0005531738],"domain_scores_gemma":[0.9931952,0.005638372,0.0005618131,0.0001818485,0.000174328,0.0002483898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001583488,0.000181953,0.01520392,0.00004633461,0.00008459363,0.000008419275,0.0002833929,0.00000594419,0.9805362,0.00004358949,0.002472804,0.001117072],"study_design_scores_gemma":[0.00124112,0.001810617,0.2183076,0.0007286198,0.0002509856,0.0003063343,0.001447632,0.0002966723,0.7505875,0.0007671688,0.02387621,0.0003796501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962367,0.000248043,0.00004065569,0.0002686422,0.0003543617,0.0003922308,0.001505816,0.0001292748,0.0008242333],"genre_scores_gemma":[0.9967107,0.00006522758,0.0006221958,0.0003746718,0.0002370539,0.00001165423,0.0006138473,0.000009080301,0.001355544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2299487,"threshold_uncertainty_score":0.9562503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01712599812682494,"score_gpt":0.2337528528608636,"score_spread":0.2166268547340387,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}