{"id":"W2167349522","doi":"10.1073/pnas.0912386106","title":"Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":89,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"National Institutes of Health; Wellcome Trust; Bill and Melinda Gates Foundation; Foundation for the National Institutes of Health","keywords":"Convalescence; Immunology; Immune system; Typhoid fever; Medicine; Peripheral blood mononuclear cell; Disease; Virology; Peripheral blood; Biology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007605779,0.0001145007,0.0002286063,0.0001895787,0.0001848642,0.0002687435,0.00005401979,0.000164618,0.0006404516],"category_scores_gemma":[0.0002960014,0.00009685405,0.00005841714,0.0002009357,0.0001220548,0.00006505695,0.00009768335,0.000195097,0.0001412242],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001329188,"about_ca_system_score_gemma":0.00007926712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001007444,"about_ca_topic_score_gemma":0.001125066,"domain_scores_codex":[0.9999143,0.00002035409,0.000004291324,0.0000288371,0.00001085993,0.00002133275],"domain_scores_gemma":[0.9998924,0.00002959387,0.00002737623,0.000006631432,0.00001915027,0.00002484619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003125757,0.0001963574,0.7388713,0.00007805062,0.00004753671,0.00113261,0.001468577,0.0001978423,0.2410795,0.00005707191,0.0004636391,0.01328167],"study_design_scores_gemma":[0.00002831301,0.0008171551,0.9850394,0.000008197413,0.00002544637,0.001490235,0.0009982386,0.0005591961,0.01017701,0.00006315281,0.0007864592,0.000007297463],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995784,0.00007559091,0.00007227733,0.00002033161,0.000001916047,0.000002732936,0.000128289,0.000002792965,0.0001176853],"genre_scores_gemma":[0.9991946,0.00004828725,0.0001180737,0.00003523776,0.000004039342,0.000008184642,0.00027678,0.000001361961,0.0003134544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001007444,"threshold_uncertainty_score":0.002142549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02995471807011818,"score_gpt":0.258309724145833,"score_spread":0.2283550060757149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}