{"id":"W2167349522","doi":"10.1073/pnas.0912386106","title":"Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":89,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"National Institutes of Health; Wellcome Trust; Bill and Melinda Gates Foundation; Foundation for the National Institutes of Health","keywords":"Convalescence; Immunology; Immune system; Typhoid fever; Medicine; Peripheral blood mononuclear cell; Disease; Virology; Peripheral blood; Biology; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00132804,0.0000890139,0.0001643872,0.00003353773,0.00010048,0.00001058579,0.0006691067,0.00006088406,0.0000241042],"category_scores_gemma":[0.0002549589,0.00002653658,0.00006925884,0.0008732048,0.0004611065,0.0001679647,0.00002424493,0.0001220838,2.669996e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001088912,"about_ca_system_score_gemma":0.000009830494,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000113802,"about_ca_topic_score_gemma":5.366973e-7,"domain_scores_codex":[0.9986436,0.00005529627,0.0003207336,0.000184808,0.0006466309,0.0001489639],"domain_scores_gemma":[0.9991989,0.0002875884,0.0003039569,0.000004925257,0.0001844452,0.00002018425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005105362,0.0002923303,0.2830527,0.00000675198,0.000008713156,1.522494e-8,0.0002959468,0.00002140254,0.7115552,0.003620669,0.00008255756,0.0005531636],"study_design_scores_gemma":[0.0001985573,0.0006761682,0.9835833,0.00003009871,0.000008240816,0.000005871537,0.0001531592,0.00003193988,0.01011117,0.005020409,0.0001262044,0.0000548301],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945925,0.00004211708,7.512695e-8,0.004474461,0.000007263843,0.0001556515,0.00002101217,0.000005027992,0.0007019087],"genre_scores_gemma":[0.9991662,0.00001419236,0.0001287128,0.0006383062,0.00003170828,0.000004605891,7.839561e-7,3.36139e-7,0.00001516695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.701444,"threshold_uncertainty_score":0.1698966,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02995471807011818,"score_gpt":0.258309724145833,"score_spread":0.2283550060757149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}