{"id":"W2167540852","doi":"10.1093/bioinformatics/btq418","title":"MetPA: a web-based metabolomics tool for pathway analysis and visualization","year":2010,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":785,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"","keywords":"Visualization; Computer science; Metabolomics; Context (archaeology); Data visualization; Zoom; Metabolic network; Metabolic pathway; Data mining; Computational biology; Bioinformatics; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001042333,0.002054604,0.001163528,0.003203974,0.0005787133,0.001782156,0.002573448,0.001171191,0.102701],"category_scores_gemma":[0.003394813,0.0007512244,0.001182148,0.003089796,0.0002563457,0.002034555,0.001940546,0.001488052,0.02879963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004101188,"about_ca_system_score_gemma":0.001151453,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001579871,"about_ca_topic_score_gemma":0.001868482,"domain_scores_codex":[0.9995346,0.00008008111,0.00003985401,0.00008699075,0.0002118744,0.00004670021],"domain_scores_gemma":[0.9986069,0.0006358081,0.0001278344,0.0001766074,0.0003014636,0.0001514404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001367546,0.0002090015,0.002829082,0.002891583,0.0002157134,0.0008376737,0.0003506871,0.008436637,0.04839533,0.007192343,0.6106194,0.316655],"study_design_scores_gemma":[0.001032899,0.0002593023,0.009390996,0.0006557769,0.0001592366,0.001879391,0.0001495092,0.1888181,0.06420174,0.02492726,0.7081254,0.000400465],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.006002584,0.0006659522,0.4220202,0.0006529419,0.0002112555,0.0002771031,0.0981672,0.4643772,0.007625584],"genre_scores_gemma":[0.06612741,0.001223024,0.6994635,0.000530631,0.0002637485,0.001929885,0.173502,0.04491902,0.01204082],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.102701,"threshold_uncertainty_score":0.3435691,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007518783320624244,"score_gpt":0.2492371449654704,"score_spread":0.2417183616448462,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}