{"id":"W2167566248","doi":"10.1093/bioinformatics/btp595","title":"NAViGaTOR: Network Analysis, Visualization and Graphing Toronto","year":2009,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":273,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Toronto; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Visualization; Computer science; Computer graphics (images); Data mining","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002458553,0.0001581032,0.0001792063,0.00003517658,0.0001393207,0.0000846465,0.0001242578,0.0001568519,0.00001080819],"category_scores_gemma":[0.00001214097,0.0001461186,0.00009837194,0.0002037863,0.00003558184,0.00002311196,0.00005893246,0.00005243389,0.000003989163],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000150759,"about_ca_system_score_gemma":0.00002146018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001089165,"about_ca_topic_score_gemma":0.00008210929,"domain_scores_codex":[0.9990942,0.00001415764,0.0003833089,0.0001201449,0.0001185162,0.0002696441],"domain_scores_gemma":[0.9993915,0.000006010058,0.0001587045,0.0002802621,0.00004800096,0.000115556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0005822548,0.0005070164,0.03914303,0.000538672,0.00580951,0.000008805345,0.01344629,0.02653643,0.009371577,0.1991422,0.183219,0.5216952],"study_design_scores_gemma":[0.002629252,0.001795193,0.03547393,0.0001199261,0.001402245,0.00007736993,0.002746015,0.732501,0.001978174,0.005209165,0.2136248,0.002442888],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4297244,0.009155989,0.5338241,0.0001979984,0.0005803625,0.0008022827,0.00004811064,0.0001448769,0.02552193],"genre_scores_gemma":[0.9849628,0.001047975,0.01162572,0.001498717,0.000295208,0.000003454195,0.0004427039,0.00001004731,0.0001134127],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7059646,"threshold_uncertainty_score":0.5958542,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00527186983615427,"score_gpt":0.2430348237312061,"score_spread":0.2377629538950518,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}