{"id":"W2167613189","doi":"10.1634/stemcells.2007-0993","title":"Copy Number Variant Analysis of Human Embryonic Stem Cells","year":2008,"lang":"en","type":"article","venue":"Stem Cells","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; Leukemia and Lymphoma Society; National Institute of General Medical Sciences; California Institute for Regenerative Medicine; National Science Foundation","keywords":"Biology; Comparative genomic hybridization; Copy-number variation; Genetics; Copy number analysis; Embryonic stem cell; Karyotype; Human genome; Genome; Computational biology; Chromosome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003933473,0.0001757365,0.0001657466,0.001346235,0.0001465454,0.0003318872,0.0002531716,0.0001612957,0.001536274],"category_scores_gemma":[0.001007569,0.00008993797,0.0001935949,0.000701672,0.0001266292,0.0000983629,0.0001738262,0.0002229831,0.0003790888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002439884,"about_ca_system_score_gemma":0.0001245967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001340149,"about_ca_topic_score_gemma":0.001155567,"domain_scores_codex":[0.9996122,0.00004921377,0.0000413217,0.0001072257,0.0001657885,0.00002436748],"domain_scores_gemma":[0.9997461,0.00009126582,0.0000280773,0.00004232996,0.00007507765,0.00001699237],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001548587,0.00001921229,0.0146244,0.0001031902,0.0000625605,0.0007049685,0.0001232925,0.0009018843,0.9362329,0.0009326222,0.0003182488,0.04582186],"study_design_scores_gemma":[0.00002284376,0.0003381294,0.1452087,0.00002399473,0.0001314227,0.005009031,0.0001208459,0.01072194,0.8151369,0.001620259,0.02162849,0.00003755224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8794545,0.003562232,0.1003706,0.0001914723,0.0001035148,0.0003743135,0.006107701,0.0005619167,0.00927371],"genre_scores_gemma":[0.9512341,0.001197592,0.03795798,0.00008345948,0.00002514764,0.0001772958,0.006066375,0.00006873824,0.003189226],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001536274,"threshold_uncertainty_score":0.005139351,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01274176462872444,"score_gpt":0.2250716320480075,"score_spread":0.2123298674192831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}