{"id":"W2167613189","doi":"10.1634/stemcells.2007-0993","title":"Copy Number Variant Analysis of Human Embryonic Stem Cells","year":2008,"lang":"en","type":"article","venue":"Stem Cells","topic":"Genomic variations and chromosomal abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; Leukemia and Lymphoma Society; National Institute of General Medical Sciences; California Institute for Regenerative Medicine; National Science Foundation","keywords":"Biology; Comparative genomic hybridization; Copy-number variation; Genetics; Copy number analysis; Embryonic stem cell; Karyotype; Human genome; Genome; Computational biology; Chromosome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001168365,0.000154475,0.0002917071,0.00006649811,0.0001297846,0.00001239803,0.0001884566,0.0001298919,0.0002995911],"category_scores_gemma":[4.676341e-7,0.0001482027,0.0002427787,0.0002316232,0.00007277702,0.000003660282,0.00008632707,0.00005577533,0.00006315402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001846548,"about_ca_system_score_gemma":0.00007260443,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000823513,"about_ca_topic_score_gemma":0.00003342461,"domain_scores_codex":[0.9989604,0.00006908728,0.0003183909,0.0002905228,0.0001347377,0.0002268976],"domain_scores_gemma":[0.9992628,0.0000110239,0.000164558,0.000397854,0.0000944124,0.0000693315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002266728,0.0001301104,0.01485248,0.0000433757,0.001102651,0.00001820581,0.0005655068,0.0005451555,0.97967,0.0004234989,0.002533484,0.00009290224],"study_design_scores_gemma":[0.000337186,0.0001196791,0.001686836,0.000005833384,0.0003368412,0.00001494926,0.0003390754,0.00006723922,0.990463,0.000008860937,0.0064079,0.0002125889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947363,0.0001570045,0.0003442221,0.00001236391,0.0001452205,0.0001064437,0.0001283139,0.000009880304,0.004360242],"genre_scores_gemma":[0.9820406,0.0001158951,0.0001174234,0.00004747324,0.00007764369,0.00000882621,0.00006334797,0.00001698101,0.01751181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01316565,"threshold_uncertainty_score":0.6043532,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01274176462872444,"score_gpt":0.2250716320480075,"score_spread":0.2123298674192831,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}