{"id":"W2167955508","doi":"10.1128/mcb.25.8.2981-2994.2005","title":"Genome-Wide Prediction and Analysis of Yeast RNase III-Dependent snoRNA Processing Signals","year":2005,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Small nucleolar RNA; Biology; RNase P; Intron; Ribosomal RNA; Ribonuclease III; Saccharomyces cerevisiae; RNA; Genetics; In silico; Tiling array; Non-coding RNA; Gene; Gene expression; Molecular biology; Computational biology; Transcriptome; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002748795,0.0001457238,0.0002546973,0.0001658926,0.00007928135,0.00002105868,0.0001043777,0.0001619168,0.00002176122],"category_scores_gemma":[0.00003806662,0.0001331609,0.00009570616,0.0001754516,0.0001490109,0.000005229642,0.0001215796,0.00008779584,0.000001066589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008938059,"about_ca_system_score_gemma":0.00003696015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003883082,"about_ca_topic_score_gemma":0.00002984847,"domain_scores_codex":[0.9988811,0.00009695962,0.0002530414,0.0004026482,0.0001011652,0.0002650816],"domain_scores_gemma":[0.9994804,0.000007547527,0.00008977027,0.0002130446,0.00007628663,0.0001329909],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006636082,0.00003795561,0.01209092,0.00001874334,0.000334661,0.000007436155,0.00004463726,0.0002564461,0.9807059,0.00002268272,0.000005824841,0.006408397],"study_design_scores_gemma":[0.000697642,0.000345233,0.008516983,0.000008220875,0.0003000053,0.00001220157,0.00007666802,0.003334861,0.9846321,0.0000349853,0.001850204,0.0001909195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9564505,0.007360915,0.0356819,0.00007660602,0.00001246146,0.0001289848,0.00003947688,0.000007500598,0.0002417093],"genre_scores_gemma":[0.9984997,0.0003632729,0.0003289352,0.00013758,0.00005358008,0.0000112326,0.0003277183,0.00001331427,0.0002646764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04204924,"threshold_uncertainty_score":0.5430144,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006818676919002242,"score_gpt":0.2397693769492978,"score_spread":0.2329507000302956,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}