{"id":"W2167990668","doi":"10.1074/mcp.m112.019026","title":"Proteomic Profiling of the Planarian Schmidtea mediterranea and Its Mucous Reveals Similarities with Human Secretions and Those Predicted for Parasitic Flatworms","year":2012,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Planarian Biology and Electrostimulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Hospital for Sick Children; Ontario Institute for Cancer Research; University of Toronto","funders":"Canada Research Chairs; Canadian Institutes of Health Research; Hospital for Sick Children; Stowers Institute for Medical Research","keywords":"Planarian; Flatworm; Biology; Proteome; Turbellaria; Planaria; Transcriptome; Proteomics; In silico; Model organism; Computational biology; Zoology; Cell biology; Bioinformatics; Genetics; Regeneration (biology); Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003638547,0.0002188391,0.000216768,0.0000475571,0.0002818473,0.00002128938,0.0001406391,0.0002928509,0.000001920274],"category_scores_gemma":[0.00009938565,0.0001641214,0.00005784373,0.00007640837,0.0001875009,0.00001568599,0.00006104341,0.0001723853,1.775166e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001313591,"about_ca_system_score_gemma":0.00006076352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005623182,"about_ca_topic_score_gemma":0.000005364854,"domain_scores_codex":[0.9988387,0.0001213621,0.0002563724,0.0003031165,0.000111575,0.0003689376],"domain_scores_gemma":[0.9993587,0.00001531776,0.0001659187,0.0002703914,0.00009094329,0.00009873785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001908221,0.00003843116,0.01137073,0.0001165231,0.0001095582,0.000001545089,0.0001276017,0.00008463886,0.9871455,0.00075199,0.00003030228,0.000032343],"study_design_scores_gemma":[0.000847475,0.0004143243,0.003361281,0.00007542917,0.0001270346,0.00004043038,0.00002426572,0.0008044852,0.9934825,0.0004797768,0.0001246201,0.0002184366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.985059,0.001417707,0.01083827,0.0003529166,0.00005559895,0.00209734,0.0001251955,0.0000151657,0.00003876608],"genre_scores_gemma":[0.9965003,0.00003426659,0.002221948,0.0002065509,0.0001318236,0.0002301358,0.0005803553,0.00003264942,0.00006197879],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01144125,"threshold_uncertainty_score":0.6692675,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01237537639870673,"score_gpt":0.2395154461191056,"score_spread":0.2271400697203989,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}