{"id":"W2168059506","doi":"10.1126/science.1167936","title":"Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds","year":2009,"lang":"en","type":"article","venue":"Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":907,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Biotechnology and Biological Sciences Research Council; Agricultural Research Service; Università Cattolica del Sacro Cuore; Holstein Association USA; Norges Forskningsråd; International Livestock Research Institute; International Atomic Energy Agency; U.S. Department of Agriculture; Agriculture and Agri-Food Canada; Empresa Brasileira de Pesquisa Agropecuária; Meat and Livestock Australia; Cooperative State Research, Education, and Extension Service; National Institutes of Health; AgResearch","keywords":"Domestication; Biology; Genetic diversity; Animal husbandry; Selection (genetic algorithm); SNP; Genetic variation; Genome; Evolutionary biology; Bovine genome; Genetics; Single-nucleotide polymorphism; Genotype; Gene; Ecology; Agriculture; Demography; Computer science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003174655,0.00008782082,0.0002308553,0.0006706464,0.0001897927,0.000282901,0.0001453123,0.000258815,0.0004798995],"category_scores_gemma":[0.0004331283,0.0001107528,0.000136631,0.0007201778,0.0002157728,0.00009825256,0.00017522,0.0002760942,0.0001049884],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001439518,"about_ca_system_score_gemma":0.0001033247,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001439944,"about_ca_topic_score_gemma":0.004056932,"domain_scores_codex":[0.9998086,0.0000456035,0.000008486133,0.00006772911,0.00003625388,0.00003343514],"domain_scores_gemma":[0.9997129,0.0001225551,0.00007199033,0.00001789873,0.00002821753,0.00004637325],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004849535,0.00008665928,0.3990498,0.00006624771,0.000297279,0.0002496174,0.0007689876,0.0005473777,0.5793867,0.0002619463,0.0002119916,0.01858853],"study_design_scores_gemma":[0.000006608769,0.00005644998,0.995214,0.000002841675,0.00003613987,0.0001705927,0.0001077229,0.0004279253,0.003482326,0.00006216608,0.000429817,0.00000340067],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993935,0.00006479298,0.0002678369,0.000009808051,6.160765e-7,9.742212e-7,0.0001554554,0.000003402436,0.0001036916],"genre_scores_gemma":[0.9981262,0.00007581207,0.0007935425,0.00002519507,0.00000406783,0.000003877721,0.0008213866,0.000003695894,0.0001462868],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001439944,"threshold_uncertainty_score":0.002863109,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01086765282856746,"score_gpt":0.239629006541082,"score_spread":0.2287613537125145,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}