{"id":"W2168141663","doi":"10.3201/eid1108.040877","title":"HIV-1 Genetic Diversity in Antenatal Cohort, Canada","year":2005,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"AIDS Vancouver; Jewish General Hospital; Institut National de Santé Publique du Québec; McGill University Health Centre; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Styrelsen för Internationellt Utvecklingssamarbete; Elizabeth Glaser Pediatric AIDS Foundation","keywords":"Clade; Genotyping; Phylogenetic tree; Cohort; Genetic diversity; Human immunodeficiency virus (HIV); Population; Medicine; Cohort study; Virology; Biology; Genotype; Genetics; Environmental health; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003301253,0.0001145417,0.0001401505,0.00009192611,0.000293592,0.000007794494,0.0001042799,0.00003878016,0.001185467],"category_scores_gemma":[0.00004819812,0.0001070192,0.0000457331,0.0001157592,0.00006589491,0.00005762267,0.0001542159,0.0001220665,0.0005445471],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002961839,"about_ca_system_score_gemma":0.0002139402,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3038157,"about_ca_topic_score_gemma":0.5106134,"domain_scores_codex":[0.9991619,0.00008194074,0.0001197801,0.0002114513,0.00005324481,0.00037166],"domain_scores_gemma":[0.999688,0.00005125386,0.0000278629,0.0001493452,0.00002597421,0.0000575761],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002570941,0.0001882229,0.9784826,0.000006501204,0.0001171865,0.0001474652,0.00006083129,0.00021122,0.0001143672,0.0000117653,0.0169831,0.003651052],"study_design_scores_gemma":[0.001259072,0.00003946463,0.9778937,0.00001044753,0.00003290601,0.00004044981,0.00004048919,0.00001331141,0.0002159739,0.00001251726,0.02031549,0.0001261944],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944854,0.002884075,0.00001634546,0.0002445524,0.0001945537,0.0001660556,0.0002557698,0.0000633076,0.001689913],"genre_scores_gemma":[0.9984,0.000109285,0.0000046179,0.0001121216,0.00003406307,0.00002172328,0.0001889794,0.000007342167,0.001121919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2067978,"threshold_uncertainty_score":0.9997276,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005991882343643003,"score_gpt":0.2196773957645874,"score_spread":0.2136855134209444,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}