{"id":"W2168281812","doi":"10.1186/1752-0509-1-36","title":"Facile: a command-line network compiler for systems biology","year":2007,"lang":"en","type":"article","venue":"BMC Systems Biology","topic":"Gene Regulatory Network Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Computer science; Scripting language; Compiler; Perl; Systems biology; Modelling biological systems; Line (geometry); Bifurcation; Simple (philosophy); MATLAB; Programming language; Theoretical computer science; Bioinformatics; Biology; Nonlinear system; Mathematics; Physics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001931018,0.002426623,0.001054139,0.001229808,0.0005410727,0.001694586,0.003894669,0.001088862,0.05787616],"category_scores_gemma":[0.006718985,0.001928087,0.001485328,0.000941634,0.0007715218,0.00294061,0.002026768,0.002634304,0.02259691],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008569578,"about_ca_system_score_gemma":0.001843881,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001331902,"about_ca_topic_score_gemma":0.001510913,"domain_scores_codex":[0.9991999,0.0001608703,0.0001125998,0.000183738,0.0002628145,0.00008012747],"domain_scores_gemma":[0.9966024,0.002231806,0.0002289327,0.0002955858,0.0005074527,0.0001338799],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001616955,0.0003482874,0.002443304,0.004746765,0.0003273669,0.001251798,0.00093534,0.07986378,0.03061123,0.05516455,0.4144441,0.4082465],"study_design_scores_gemma":[0.00116937,0.0002376127,0.001202824,0.000576056,0.0001126345,0.001226868,0.0001228007,0.4501434,0.05483476,0.06755731,0.422572,0.00024436],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.001821133,0.0001515815,0.7353936,0.0001725007,0.00007980961,0.0002295289,0.006599418,0.2516861,0.003866436],"genre_scores_gemma":[0.02489685,0.0004547719,0.887656,0.0005008724,0.00006575024,0.002145106,0.01363933,0.06356029,0.007081033],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05787616,"threshold_uncertainty_score":0.1936151,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02887046295059158,"score_gpt":0.2911497765064473,"score_spread":0.2622793135558557,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}