{"id":"W2168485389","doi":"10.1128/aem.72.4.2651-2660.2006","title":"The Locus Coding for the 3-Nitrobenzoate Dioxygenase of <i>Comamonas</i> sp. Strain JS46 Is Flanked by IS <i>1071</i> Elements and Is Subject to Deletion and Inversion Events","year":2006,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Insertion sequence; Comamonas; Genetics; Biology; Locus (genetics); Dioxygenase; Plasmid; Direct repeat; Molecular biology; Gene; Transposable element; Bacteria; Pseudomonas","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001294549,0.0008525143,0.0004961927,0.0004360045,0.000299865,0.0003569358,0.0003417799,0.0002527854,0.001200288],"category_scores_gemma":[0.0002275052,0.0002750281,0.0005533785,0.0005990515,0.0002701542,0.0001769807,0.00041402,0.0005569487,0.001200491],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005125317,"about_ca_system_score_gemma":0.000454575,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003903442,"about_ca_topic_score_gemma":0.002742844,"domain_scores_codex":[0.9997229,0.00002693547,0.00002656652,0.00006493524,0.0001020177,0.00005657819],"domain_scores_gemma":[0.9996955,0.00003041029,0.000105595,0.0000558,0.00003378162,0.00007891516],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003284579,0.00001755026,0.0004782149,0.00002146081,0.000003135616,0.00002561492,0.00001852406,0.00002046301,0.9985274,0.00003155025,0.00002303616,0.0008001775],"study_design_scores_gemma":[0.00001418096,0.0002480903,0.04048686,0.00001632527,0.00003417991,0.0006229479,0.00009761961,0.0005955454,0.9523631,0.00005532366,0.005450887,0.00001502601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900096,0.00037166,0.00398511,0.00008897819,0.00004377574,0.0000847852,0.00368599,0.0001724367,0.001557561],"genre_scores_gemma":[0.9628123,0.0007148748,0.008714611,0.00008328471,0.00002904504,0.0001212912,0.01940785,0.0001528324,0.00796403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003903442,"threshold_uncertainty_score":0.007761478,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003707063430524403,"score_gpt":0.1740404555355299,"score_spread":0.1703333921050055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}