{"id":"W2168670121","doi":"10.1093/database/bar051","title":"The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data","year":2011,"lang":"en","type":"article","venue":"Database","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Division of Emerging Frontiers; National Institute of Allergy and Infectious Diseases; Division of Biological Infrastructure; National Institute of General Medical Sciences; Smithsonian Tropical Research Institute; National Human Genome Research Institute; Agricultural Research Service; National Institutes of Health; National Institute of Food and Agriculture; Smithsonian Institution; U.S. Department of Agriculture; Commonwealth Scientific and Industrial Research Organisation; National Evolutionary Synthesis Center; Agriculture and Agri-Food Canada; National Science Foundation","keywords":"Computer science; Modular design; Genotyping; Biological database; Relational database; Schema (genetic algorithms); Database; Information retrieval; Data mining; Bioinformatics; Biology; Programming language; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01188716,0.0007369762,0.001128703,0.003279717,0.0009082565,0.006195905,0.004890912,0.001687167,0.004664177],"category_scores_gemma":[0.01061252,0.001023618,0.001488908,0.003276555,0.0009837567,0.006168925,0.004096975,0.001951615,0.003570837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00206471,"about_ca_system_score_gemma":0.003914699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006445974,"about_ca_topic_score_gemma":0.005908304,"domain_scores_codex":[0.9964474,0.0006049072,0.0009891866,0.0007541241,0.001010693,0.0001935652],"domain_scores_gemma":[0.9909739,0.001757701,0.0008260056,0.00365918,0.002254551,0.0005285916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001290514,0.0006293862,0.02714574,0.002662511,0.000777238,0.000958005,0.003058683,0.01488838,0.05144653,0.2531271,0.2503624,0.3936536],"study_design_scores_gemma":[0.0002026807,0.0001796241,0.006186432,0.0003215386,0.0001811838,0.001518865,0.0004568395,0.02784133,0.01818746,0.02892861,0.9157676,0.0002278274],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.007985,0.0007591155,0.9266226,0.0009562469,0.0001922232,0.001088578,0.02884463,0.02655155,0.007000036],"genre_scores_gemma":[0.05529144,0.001203819,0.8089086,0.002389153,0.0001352369,0.001879122,0.1180259,0.003640792,0.008525987],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01188716,"threshold_uncertainty_score":0.06286609,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05710983984248658,"score_gpt":0.2576520730126977,"score_spread":0.2005422331702111,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}