{"id":"W2168670597","doi":"10.1111/1574-6968.12435","title":"Genomic analysis of<i>Pseudomonas aeruginosa</i>PA96, the host of carbapenem resistance plasmid pOZ176","year":2014,"lang":"en","type":"letter","venue":"FEMS Microbiology Letters","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Université Laval; Toronto Public Health; Centre hospitalier universitaire de Québec","funders":"Guangzhou First People's Hospital","keywords":"Biology; Genome; ORFS; Genetics; Plasmid; Contig; Virulence; Whole genome sequencing; Gene; Genomic island; Operon; Microbiology; Open reading frame; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006349687,0.00022034,0.0001643775,0.0004520549,0.0002266759,0.0001771577,0.0001638744,0.0004676449,0.001465128],"category_scores_gemma":[0.0004724471,0.0001119415,0.0002562951,0.0004396834,0.0001808259,0.0001317125,0.0002072619,0.000485655,0.0006550059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002207568,"about_ca_system_score_gemma":0.0001305282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002070106,"about_ca_topic_score_gemma":0.001387223,"domain_scores_codex":[0.9998842,0.00001267721,0.000009066206,0.00002996276,0.00004186929,0.0000222287],"domain_scores_gemma":[0.999835,0.00005377064,0.00002960011,0.00002284337,0.00003216302,0.00002665851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001670978,0.00005110057,0.006099875,0.00009819569,0.000008022676,0.002625978,0.00008040781,0.00007658545,0.9833225,0.00009300892,0.000431247,0.006946135],"study_design_scores_gemma":[0.00008935252,0.001495892,0.5177181,0.00005547019,0.0001068535,0.03285926,0.0007416586,0.002416637,0.4113134,0.0005691244,0.03259439,0.00003995452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9880128,0.0007730805,0.002233541,0.001200458,0.00006679709,0.0001014224,0.004286483,0.00009103908,0.003234521],"genre_scores_gemma":[0.9847398,0.0008745869,0.003650899,0.0005095024,0.00008126695,0.00005449769,0.008294533,0.00003703573,0.001758026],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002070106,"threshold_uncertainty_score":0.004901409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006753842619275377,"score_gpt":0.2085701887361056,"score_spread":0.2018163461168302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}