{"id":"W2168724477","doi":"10.1091/mbc.e14-04-0871","title":"Transcription factor regulation and chromosome dynamics during pseudohyphal growth","year":2014,"lang":"en","type":"article","venue":"Molecular Biology of the Cell","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of Neurological Disorders and Stroke; National Human Genome Research Institute; National Institute on Drug Abuse; National Institutes of Health; W. M. Keck Foundation","keywords":"Biology; Transcription factor; Multicellular organism; Transposable element; Saccharomyces cerevisiae; Genetics; Cell biology; DNA binding site; Binding site; Yeast; DNA; Promoter; DNA-binding protein; Tiling array; Genome; Computational biology; Gene; DNA microarray; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005978796,0.0001395929,0.0001401388,0.0003891553,0.0001203159,0.0002622613,0.0001696966,0.0001605527,0.0005827323],"category_scores_gemma":[0.000286534,0.0001343344,0.0001019932,0.0002596896,0.0002182325,0.0002255754,0.000203963,0.000231399,0.0001839066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002359864,"about_ca_system_score_gemma":0.0001024788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001419194,"about_ca_topic_score_gemma":0.001905952,"domain_scores_codex":[0.9999009,0.00001003284,0.00000496957,0.00004071603,0.00002768385,0.00001562742],"domain_scores_gemma":[0.9997813,0.00005748634,0.00006892206,0.00001605918,0.00003424188,0.00004209069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009105908,0.000003413366,0.002187458,0.000009404754,0.000003498286,0.00002054916,0.00002332047,0.0001369019,0.9964194,0.00005079499,0.00001326758,0.001040833],"study_design_scores_gemma":[0.00001162807,0.0001377846,0.2631215,0.000007537893,0.00001703749,0.0003259753,0.0001304442,0.007592175,0.7269736,0.0003891784,0.001272343,0.00002082987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967142,0.0003360684,0.00211618,0.00002253344,0.000002108537,0.000004121733,0.000429155,0.00004763478,0.0003278807],"genre_scores_gemma":[0.9975047,0.0001735966,0.001060618,0.00001297123,0.000002368882,0.00001038439,0.000761829,0.00001309791,0.0004605383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001419194,"threshold_uncertainty_score":0.002821863,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004945174787622034,"score_gpt":0.2185928562260142,"score_spread":0.2136476814383922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}