{"id":"W2168975607","doi":"10.1128/jcm.02213-09","title":"Evolutionary Changes Affecting Rapid Identification of 2008 Newcastle Disease Viruses Isolated from Double-Crested Cormorants","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"U.S. Poultry and Egg Association; U.S. Department of Agriculture","keywords":"Biology; Virulence; Newcastle disease; Phylogenetic tree; Virology; Genotype; Virus; Phylogenetics; Gene; Polymerase chain reaction; Primer (cosmetics); Cormorant; Genetics; Sequence analysis","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007026742,0.0001365144,0.0006914389,0.0001443288,0.00006137274,0.000005089445,0.0001717866,0.0003414443,0.000498454],"category_scores_gemma":[0.001811677,0.0001034987,0.000313528,0.0001199861,0.0004285736,0.00009335487,0.00004904526,0.0007243908,0.00004619948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009983694,"about_ca_system_score_gemma":0.0002430813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002309533,"about_ca_topic_score_gemma":0.00003304799,"domain_scores_codex":[0.9979291,0.0002751468,0.001327742,0.0002111415,0.00006771097,0.0001891915],"domain_scores_gemma":[0.9970531,0.0007667894,0.001305417,0.0002505746,0.0003644754,0.0002596622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.01285668,0.0007314364,0.2394965,0.00002811232,0.0002607007,0.00006607874,0.0000258926,0.000002214982,0.7404637,0.00001109847,0.002884564,0.00317308],"study_design_scores_gemma":[0.005677323,0.001311444,0.9811545,0.0001139146,0.0005843922,0.0002109124,0.00003193888,0.00008357791,0.007477007,0.0001971504,0.003045492,0.0001123559],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994561,0.001757324,0.00009550367,0.001395176,0.001836481,0.0001809729,0.0001382899,0.00001620613,0.00001908101],"genre_scores_gemma":[0.9976382,0.0003118456,0.0002621915,0.0008048327,0.0008361132,0.000001622242,0.00007743009,0.00001356523,0.00005417983],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.741658,"threshold_uncertainty_score":0.5457722,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0841715374578393,"score_gpt":0.3991591611129303,"score_spread":0.314987623655091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}