{"id":"W2169555805","doi":"10.1111/1462-2920.12883","title":"Genome analyses suggest the presence of polyploidy and recent human‐driven expansions in eight global populations of the honeybee pathogen <scp> <i>N</i> </scp> <i>osema ceranae</i>","year":2015,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":96,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Canadian Institute for Advanced Research","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science; Canadian Institute for Advanced Research","keywords":"Biology; Nosema ceranae; Genome; Population; Genetics; Phylogenetic tree; Genetic diversity; Population genomics; Evolutionary biology; Polyploid; Nosema; Zoology; Genomics; Gene; Microsporidia; Spore","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002076981,0.0001190968,0.0001943291,0.00001155651,0.000166782,0.000008494291,0.0003577045,0.00009717601,0.00009053355],"category_scores_gemma":[0.00006234388,0.00004142747,0.00006463163,0.000246276,0.0005621625,0.00003979422,0.0003104815,0.0001271376,0.000006746024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004832701,"about_ca_system_score_gemma":0.00001144665,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008969798,"about_ca_topic_score_gemma":0.001976739,"domain_scores_codex":[0.9988163,0.0003398247,0.0002695167,0.0002148225,0.0001041077,0.0002553988],"domain_scores_gemma":[0.9994791,0.0002078779,0.0001199943,0.0001164786,0.00001278964,0.00006377112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000004515236,0.00008485347,0.1938782,0.00000173807,0.000008180364,9.193774e-7,0.0002031375,0.00004192104,0.8054092,0.00004563202,0.0001116203,0.0002100989],"study_design_scores_gemma":[0.0002066046,0.0002047102,0.9677106,0.00001055989,0.00001852903,0.00002796945,0.001106564,0.000007026899,0.02640208,0.0003788135,0.003872687,0.00005384775],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969226,0.001277586,7.011847e-7,0.000395102,0.00005693073,0.0002873215,0.0007331407,0.000004103438,0.0003225009],"genre_scores_gemma":[0.9993416,0.0002560348,0.00002821474,0.00007680808,0.00003864703,0.00001013326,0.0001692329,0.000001138445,0.00007819494],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7790071,"threshold_uncertainty_score":0.2071311,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05638191279867824,"score_gpt":0.2792922376764402,"score_spread":0.2229103248777619,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}